Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1098

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1097 and DvMF_1098 are separated by 553 nucleotidesDvMF_1098 and DvMF_1099 are separated by 121 nucleotides DvMF_1097: DvMF_1097 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 1,342,486 to 1,343,661 _1097 DvMF_1098: DvMF_1098 - glycosyl transferase group 1 (RefSeq), at 1,344,215 to 1,345,441 _1098 DvMF_1099: DvMF_1099 - drug resistance transporter, EmrB/QacA subfamily (RefSeq), at 1,345,563 to 1,347,122 _1099 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1343.538 kb on - strand, within DvMF_1097at 1343.798 kb on - strandat 1343.817 kb on + strandat 1343.926 kb on + strandat 1343.934 kb on - strandat 1344.086 kb on - strandat 1344.388 kb on - strand, within DvMF_1098at 1344.528 kb on - strand, within DvMF_1098at 1344.593 kb on - strand, within DvMF_1098at 1344.609 kb on - strand, within DvMF_1098at 1344.641 kb on + strand, within DvMF_1098at 1344.801 kb on - strand, within DvMF_1098at 1344.913 kb on + strand, within DvMF_1098at 1344.957 kb on + strand, within DvMF_1098at 1345.073 kb on - strand, within DvMF_1098at 1345.128 kb on - strand, within DvMF_1098at 1345.386 kb on + strandat 1345.423 kb on - strandat 1345.583 kb on - strandat 1345.801 kb on + strand, within DvMF_1099at 1346.007 kb on + strand, within DvMF_1099at 1346.363 kb on + strand, within DvMF_1099

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,343,538 - DvMF_1097 0.89 -0.8
1,343,798 - -0.6
1,343,817 + -0.3
1,343,926 + -0.6
1,343,934 - -0.4
1,344,086 - -3.1
1,344,388 - DvMF_1098 0.14 -4.7
1,344,528 - DvMF_1098 0.26 -3.4
1,344,593 - DvMF_1098 0.31 -1.9
1,344,609 - DvMF_1098 0.32 -2.9
1,344,641 + DvMF_1098 0.35 -5.1
1,344,801 - DvMF_1098 0.48 -4.7
1,344,913 + DvMF_1098 0.57 -4.1
1,344,957 + DvMF_1098 0.60 -6.8
1,345,073 - DvMF_1098 0.70 -4.0
1,345,128 - DvMF_1098 0.74 -5.3
1,345,386 + -4.7
1,345,423 - -2.0
1,345,583 - -0.7
1,345,801 + DvMF_1099 0.15 -0.6
1,346,007 + DvMF_1099 0.28 -0.8
1,346,363 + DvMF_1099 0.51 -0.7

Or see this region's nucleotide sequence