Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0921

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0920 and DvMF_0921 overlap by 4 nucleotidesDvMF_0921 and DvMF_0922 are separated by 3 nucleotides DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041 _0920 DvMF_0921: DvMF_0921 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,113,038 to 1,113,892 _0921 DvMF_0922: DvMF_0922 - hypothetical protein (RefSeq), at 1,113,896 to 1,115,659 _0922 Position (kb) 1113 1114Strain fitness (log2 ratio) -2 -1 0 1at 1112.189 kb on - strand, within DvMF_0920at 1112.203 kb on - strand, within DvMF_0920at 1112.417 kb on + strand, within DvMF_0920at 1112.477 kb on - strand, within DvMF_0920at 1112.601 kb on + strand, within DvMF_0920at 1112.687 kb on - strand, within DvMF_0920at 1112.699 kb on + strand, within DvMF_0920at 1112.699 kb on + strand, within DvMF_0920at 1112.707 kb on - strand, within DvMF_0920at 1112.891 kb on + strand, within DvMF_0920at 1113.063 kb on - strandat 1113.105 kb on + strandat 1113.406 kb on + strand, within DvMF_0921at 1113.540 kb on + strand, within DvMF_0921at 1113.695 kb on + strand, within DvMF_0921at 1113.703 kb on - strand, within DvMF_0921at 1113.728 kb on + strand, within DvMF_0921at 1114.103 kb on - strand, within DvMF_0922at 1114.203 kb on - strand, within DvMF_0922at 1114.203 kb on - strand, within DvMF_0922at 1114.285 kb on - strand, within DvMF_0922at 1114.515 kb on + strand, within DvMF_0922at 1114.592 kb on - strand, within DvMF_0922at 1114.623 kb on + strand, within DvMF_0922at 1114.706 kb on + strand, within DvMF_0922at 1114.791 kb on - strand, within DvMF_0922

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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1,112,189 - DvMF_0920 0.17 -1.5
1,112,203 - DvMF_0920 0.19 -1.8
1,112,417 + DvMF_0920 0.39 -1.5
1,112,477 - DvMF_0920 0.45 +0.8
1,112,601 + DvMF_0920 0.57 -1.4
1,112,687 - DvMF_0920 0.66 -1.1
1,112,699 + DvMF_0920 0.67 -1.6
1,112,699 + DvMF_0920 0.67 -1.6
1,112,707 - DvMF_0920 0.68 -1.3
1,112,891 + DvMF_0920 0.85 -1.1
1,113,063 - -1.5
1,113,105 + -1.5
1,113,406 + DvMF_0921 0.43 -1.8
1,113,540 + DvMF_0921 0.59 -1.3
1,113,695 + DvMF_0921 0.77 -1.2
1,113,703 - DvMF_0921 0.78 -0.7
1,113,728 + DvMF_0921 0.81 -1.2
1,114,103 - DvMF_0922 0.12 -0.4
1,114,203 - DvMF_0922 0.17 -0.0
1,114,203 - DvMF_0922 0.17 -0.1
1,114,285 - DvMF_0922 0.22 -0.3
1,114,515 + DvMF_0922 0.35 -0.2
1,114,592 - DvMF_0922 0.39 -0.1
1,114,623 + DvMF_0922 0.41 -0.0
1,114,706 + DvMF_0922 0.46 -0.2
1,114,791 - DvMF_0922 0.51 +0.0

Or see this region's nucleotide sequence