Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0722 and DvMF_0723 are separated by 2 nucleotides DvMF_0723 and DvMF_0724 overlap by 1 nucleotides DvMF_0724 and DvMF_0725 overlap by 4 nucleotides DvMF_0725 and DvMF_0726 are separated by 13 nucleotides
DvMF_0722: DvMF_0722 - phage-related membrane protein (RefSeq), at 872,838 to 873,209
_0722
DvMF_0723: DvMF_0723 - Lytic transglycosylase catalytic (RefSeq), at 873,212 to 874,000
_0723
DvMF_0724: DvMF_0724 - hypothetical protein (RefSeq), at 874,000 to 874,695
_0724
DvMF_0725: DvMF_0725 - hypothetical protein (RefSeq), at 874,692 to 874,958
_0725
DvMF_0726: DvMF_0726 - hypothetical protein (RefSeq), at 874,972 to 875,187
_0726
Position (kb) 873
874
875 Strain fitness (log2 ratio) -1
0
1
2 at 872.734 kb on + strand at 873.242 kb on - strand at 873.362 kb on - strand, within DvMF_0723 at 873.473 kb on + strand, within DvMF_0723 at 873.476 kb on - strand, within DvMF_0723 at 873.478 kb on + strand, within DvMF_0723 at 873.594 kb on + strand, within DvMF_0723 at 873.667 kb on + strand, within DvMF_0723 at 873.714 kb on + strand, within DvMF_0723 at 873.807 kb on + strand, within DvMF_0723 at 874.183 kb on + strand, within DvMF_0724 at 874.333 kb on + strand, within DvMF_0724 at 874.391 kb on - strand, within DvMF_0724 at 874.640 kb on + strand at 874.659 kb on + strand at 874.738 kb on - strand, within DvMF_0725 at 874.761 kb on + strand, within DvMF_0725
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 872,734 + +1.0 873,242 - +0.8 873,362 - DvMF_0723 0.19 +0.1 873,473 + DvMF_0723 0.33 +0.7 873,476 - DvMF_0723 0.33 +0.7 873,478 + DvMF_0723 0.34 +0.3 873,594 + DvMF_0723 0.48 +0.7 873,667 + DvMF_0723 0.58 +1.0 873,714 + DvMF_0723 0.64 +0.6 873,807 + DvMF_0723 0.75 +0.6 874,183 + DvMF_0724 0.26 +0.7 874,333 + DvMF_0724 0.48 +0.7 874,391 - DvMF_0724 0.56 +0.9 874,640 + +1.1 874,659 + +0.8 874,738 - DvMF_0725 0.17 +1.5 874,761 + DvMF_0725 0.26 +1.8
Or see this region's nucleotide sequence