Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0120

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0119 and ispG are separated by 428 nucleotidesispG and DvMF_0121 overlap by 1 nucleotides DvMF_0119: DvMF_0119 - periplasmic solute binding protein (RefSeq), at 129,416 to 130,450 _0119 DvMF_0120: ispG - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq), at 130,879 to 131,970 ispG DvMF_0121: DvMF_0121 - prolyl-tRNA synthetase (RefSeq), at 131,970 to 133,697 _0121 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1at 130.103 kb on - strand, within DvMF_0119at 130.431 kb on + strandat 130.432 kb on + strandat 130.566 kb on + strandat 130.717 kb on + strandat 130.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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130,103 - DvMF_0119 0.66 -0.3
130,431 + +0.4
130,432 + +0.1
130,566 + -0.1
130,717 + -0.4
130,731 - -1.9

Or see this region's nucleotide sequence