Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4049

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4047 and Shewana3_4048 are separated by 102 nucleotidesShewana3_4048 and Shewana3_4049 are separated by 203 nucleotidesShewana3_4049 and Shewana3_4050 are separated by 276 nucleotidesShewana3_4050 and Shewana3_4051 are separated by 128 nucleotides Shewana3_4047: Shewana3_4047 - hypothetical protein (RefSeq), at 4,863,399 to 4,864,145 _4047 Shewana3_4048: Shewana3_4048 - 3-methyladenine DNA glycosylase (RefSeq), at 4,864,248 to 4,864,937 _4048 Shewana3_4049: Shewana3_4049 - glutathione S-transferase domain-containing protein (RefSeq), at 4,865,141 to 4,865,788 _4049 Shewana3_4050: Shewana3_4050 - hypothetical protein (RefSeq), at 4,866,065 to 4,866,595 _4050 Shewana3_4051: Shewana3_4051 - oligopeptidase A (RefSeq), at 4,866,724 to 4,868,763 _4051 Position (kb) 4865 4866Strain fitness (log2 ratio) -1 0 1 2at 4864.283 kb on - strandat 4864.516 kb on - strand, within Shewana3_4048at 4864.678 kb on + strand, within Shewana3_4048at 4864.686 kb on + strand, within Shewana3_4048at 4864.694 kb on - strand, within Shewana3_4048at 4864.749 kb on + strand, within Shewana3_4048at 4864.768 kb on - strand, within Shewana3_4048at 4864.795 kb on + strand, within Shewana3_4048at 4864.795 kb on + strand, within Shewana3_4048at 4864.803 kb on - strand, within Shewana3_4048at 4864.821 kb on - strand, within Shewana3_4048at 4864.834 kb on + strand, within Shewana3_4048at 4864.837 kb on - strand, within Shewana3_4048at 4864.882 kb on + strandat 4865.307 kb on - strand, within Shewana3_4049at 4865.323 kb on - strand, within Shewana3_4049at 4865.407 kb on + strand, within Shewana3_4049at 4865.419 kb on + strand, within Shewana3_4049at 4865.866 kb on - strandat 4865.866 kb on - strandat 4865.881 kb on - strandat 4865.881 kb on - strandat 4866.144 kb on + strand, within Shewana3_4050at 4866.156 kb on + strand, within Shewana3_4050at 4866.212 kb on + strand, within Shewana3_4050at 4866.225 kb on - strand, within Shewana3_4050at 4866.230 kb on - strand, within Shewana3_4050at 4866.423 kb on - strand, within Shewana3_4050at 4866.423 kb on - strand, within Shewana3_4050at 4866.423 kb on - strand, within Shewana3_4050at 4866.515 kb on - strand, within Shewana3_4050at 4866.599 kb on - strandat 4866.625 kb on + strandat 4866.633 kb on - strandat 4866.721 kb on + strandat 4866.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,864,283 - +0.8
4,864,516 - Shewana3_4048 0.39 +0.0
4,864,678 + Shewana3_4048 0.62 -0.2
4,864,686 + Shewana3_4048 0.63 -0.7
4,864,694 - Shewana3_4048 0.65 +0.8
4,864,749 + Shewana3_4048 0.73 +0.5
4,864,768 - Shewana3_4048 0.75 -1.7
4,864,795 + Shewana3_4048 0.79 -0.1
4,864,795 + Shewana3_4048 0.79 +0.6
4,864,803 - Shewana3_4048 0.80 +1.4
4,864,821 - Shewana3_4048 0.83 -1.4
4,864,834 + Shewana3_4048 0.85 +1.3
4,864,837 - Shewana3_4048 0.85 -0.3
4,864,882 + -1.2
4,865,307 - Shewana3_4049 0.26 -0.7
4,865,323 - Shewana3_4049 0.28 -0.1
4,865,407 + Shewana3_4049 0.41 +0.5
4,865,419 + Shewana3_4049 0.43 +0.3
4,865,866 - -0.0
4,865,866 - +0.7
4,865,881 - -0.1
4,865,881 - -1.4
4,866,144 + Shewana3_4050 0.15 -0.7
4,866,156 + Shewana3_4050 0.17 +2.2
4,866,212 + Shewana3_4050 0.28 +0.6
4,866,225 - Shewana3_4050 0.30 -0.5
4,866,230 - Shewana3_4050 0.31 -0.1
4,866,423 - Shewana3_4050 0.67 -1.5
4,866,423 - Shewana3_4050 0.67 +0.8
4,866,423 - Shewana3_4050 0.67 +0.1
4,866,515 - Shewana3_4050 0.85 +1.7
4,866,599 - +1.6
4,866,625 + +1.2
4,866,633 - +0.4
4,866,721 + +0.0
4,866,743 - +0.5

Or see this region's nucleotide sequence