Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3286

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3286 and Shewana3_3287 are separated by 271 nucleotides Shewana3_3286: Shewana3_3286 - dienelactone hydrolase (RefSeq), at 3,930,179 to 3,931,141 _3286 Shewana3_3287: Shewana3_3287 - hypothetical protein (RefSeq), at 3,931,413 to 3,933,701 _3287 Position (kb) 3930 3931 3932Strain fitness (log2 ratio) -2 -1 0 1at 3929.250 kb on + strandat 3929.350 kb on + strandat 3929.382 kb on + strandat 3929.460 kb on - strandat 3929.628 kb on - strandat 3929.649 kb on + strandat 3929.859 kb on - strandat 3930.100 kb on + strandat 3930.101 kb on - strandat 3930.176 kb on + strandat 3930.184 kb on - strandat 3930.184 kb on - strandat 3930.291 kb on + strand, within Shewana3_3286at 3930.416 kb on + strand, within Shewana3_3286at 3930.424 kb on - strand, within Shewana3_3286at 3930.688 kb on + strand, within Shewana3_3286at 3930.793 kb on + strand, within Shewana3_3286at 3930.794 kb on + strand, within Shewana3_3286at 3930.843 kb on - strand, within Shewana3_3286at 3930.880 kb on + strand, within Shewana3_3286at 3930.996 kb on - strand, within Shewana3_3286at 3931.112 kb on - strandat 3931.167 kb on + strandat 3931.172 kb on + strandat 3931.172 kb on + strandat 3931.198 kb on + strandat 3931.242 kb on - strandat 3931.715 kb on + strand, within Shewana3_3287at 3931.758 kb on + strand, within Shewana3_3287at 3931.820 kb on + strand, within Shewana3_3287at 3931.941 kb on + strand, within Shewana3_3287at 3932.071 kb on - strand, within Shewana3_3287

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
3,929,250 + +0.3
3,929,350 + +1.3
3,929,382 + -0.7
3,929,460 - +1.5
3,929,628 - +0.4
3,929,649 + -2.0
3,929,859 - +1.2
3,930,100 + -0.0
3,930,101 - -0.7
3,930,176 + -1.0
3,930,184 - -0.5
3,930,184 - -0.3
3,930,291 + Shewana3_3286 0.12 -1.4
3,930,416 + Shewana3_3286 0.25 -0.4
3,930,424 - Shewana3_3286 0.25 +1.3
3,930,688 + Shewana3_3286 0.53 -0.5
3,930,793 + Shewana3_3286 0.64 -0.9
3,930,794 + Shewana3_3286 0.64 -0.2
3,930,843 - Shewana3_3286 0.69 -1.6
3,930,880 + Shewana3_3286 0.73 -0.1
3,930,996 - Shewana3_3286 0.85 +0.6
3,931,112 - +1.4
3,931,167 + +1.4
3,931,172 + +0.4
3,931,172 + +0.6
3,931,198 + -0.0
3,931,242 - -1.7
3,931,715 + Shewana3_3287 0.13 +1.5
3,931,758 + Shewana3_3287 0.15 +0.7
3,931,820 + Shewana3_3287 0.18 +0.3
3,931,941 + Shewana3_3287 0.23 -0.6
3,932,071 - Shewana3_3287 0.29 +0.5

Or see this region's nucleotide sequence