Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0120

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0119 and Shewana3_R0120 are separated by 296 nucleotidesShewana3_R0120 and Shewana3_3167 are separated by 700 nucleotides Shewana3_R0119: Shewana3_R0119 - 23S ribosomal RNA (RefSeq), at 3,800,194 to 3,803,088 _R0119 Shewana3_R0120: Shewana3_R0120 - 16S ribosomal RNA (RefSeq), at 3,803,385 to 3,804,939 _R0120 Shewana3_3167: Shewana3_3167 - CDP-diacylglycerol--serine O-phosphatidyltransferase (RefSeq), at 3,805,640 to 3,806,458 _3167 Position (kb) 3803 3804 3805Strain fitness (log2 ratio) -2 -1 0 1 2at 3805.182 kb on - strandat 3805.459 kb on + strandat 3805.478 kb on + strandat 3805.479 kb on + strandat 3805.589 kb on - strandat 3805.597 kb on - strandat 3805.638 kb on + strandat 3805.646 kb on - strandat 3805.646 kb on - strandat 3805.646 kb on - strandat 3805.646 kb on - strandat 3805.678 kb on - strandat 3805.683 kb on + strandat 3805.812 kb on - strand, within Shewana3_3167

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,805,182 - -1.3
3,805,459 + +0.9
3,805,478 + +0.7
3,805,479 + -0.7
3,805,589 - +2.3
3,805,597 - -0.6
3,805,638 + +0.3
3,805,646 - -0.5
3,805,646 - -1.9
3,805,646 - +0.6
3,805,646 - -0.4
3,805,678 - -1.2
3,805,683 + +1.1
3,805,812 - Shewana3_3167 0.21 +0.6

Or see this region's nucleotide sequence