Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3088 and Shewana3_3089 are separated by 419 nucleotides Shewana3_3089 and Shewana3_3090 are separated by 370 nucleotides
Shewana3_3088: Shewana3_3088 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,702,013 to 3,704,133
_3088
Shewana3_3089: Shewana3_3089 - amino acid/peptide transporter (RefSeq), at 3,704,553 to 3,706,103
_3089
Shewana3_3090: Shewana3_3090 - luciferase family protein (RefSeq), at 3,706,474 to 3,707,523
_3090
Position (kb)
3704
3705
3706
3707 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3703.571 kb on - strand, within Shewana3_3088 at 3703.689 kb on + strand, within Shewana3_3088 at 3703.697 kb on - strand, within Shewana3_3088 at 3704.235 kb on - strand at 3704.730 kb on - strand, within Shewana3_3089 at 3704.796 kb on + strand, within Shewana3_3089 at 3704.827 kb on + strand, within Shewana3_3089 at 3705.019 kb on + strand, within Shewana3_3089 at 3705.055 kb on - strand, within Shewana3_3089 at 3705.339 kb on + strand, within Shewana3_3089 at 3705.452 kb on + strand, within Shewana3_3089 at 3705.469 kb on - strand, within Shewana3_3089 at 3705.532 kb on - strand, within Shewana3_3089 at 3705.820 kb on + strand, within Shewana3_3089 at 3705.900 kb on + strand, within Shewana3_3089 at 3705.900 kb on + strand, within Shewana3_3089 at 3706.120 kb on + strand at 3706.253 kb on - strand at 3706.303 kb on + strand at 3706.362 kb on + strand at 3706.367 kb on + strand at 3706.443 kb on + strand at 3706.641 kb on - strand, within Shewana3_3090 at 3706.774 kb on - strand, within Shewana3_3090 at 3706.860 kb on - strand, within Shewana3_3090
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,703,571 - Shewana3_3088 0.73 -0.6 3,703,689 + Shewana3_3088 0.79 +0.3 3,703,697 - Shewana3_3088 0.79 +0.1 3,704,235 - +1.4 3,704,730 - Shewana3_3089 0.11 +0.5 3,704,796 + Shewana3_3089 0.16 +1.1 3,704,827 + Shewana3_3089 0.18 +4.2 3,705,019 + Shewana3_3089 0.30 +1.0 3,705,055 - Shewana3_3089 0.32 +0.2 3,705,339 + Shewana3_3089 0.51 +1.8 3,705,452 + Shewana3_3089 0.58 +0.4 3,705,469 - Shewana3_3089 0.59 +1.9 3,705,532 - Shewana3_3089 0.63 +2.1 3,705,820 + Shewana3_3089 0.82 -2.1 3,705,900 + Shewana3_3089 0.87 +1.6 3,705,900 + Shewana3_3089 0.87 +0.7 3,706,120 + +0.3 3,706,253 - -0.2 3,706,303 + +1.2 3,706,362 + +0.3 3,706,367 + -1.8 3,706,443 + +1.6 3,706,641 - Shewana3_3090 0.16 +0.0 3,706,774 - Shewana3_3090 0.29 +1.0 3,706,860 - Shewana3_3090 0.37 -3.1
Or see this region's nucleotide sequence