Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3089

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3088 and Shewana3_3089 are separated by 419 nucleotidesShewana3_3089 and Shewana3_3090 are separated by 370 nucleotides Shewana3_3088: Shewana3_3088 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,702,013 to 3,704,133 _3088 Shewana3_3089: Shewana3_3089 - amino acid/peptide transporter (RefSeq), at 3,704,553 to 3,706,103 _3089 Shewana3_3090: Shewana3_3090 - luciferase family protein (RefSeq), at 3,706,474 to 3,707,523 _3090 Position (kb) 3704 3705 3706 3707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3703.571 kb on - strand, within Shewana3_3088at 3703.689 kb on + strand, within Shewana3_3088at 3703.697 kb on - strand, within Shewana3_3088at 3704.235 kb on - strandat 3704.730 kb on - strand, within Shewana3_3089at 3704.796 kb on + strand, within Shewana3_3089at 3704.827 kb on + strand, within Shewana3_3089at 3705.019 kb on + strand, within Shewana3_3089at 3705.055 kb on - strand, within Shewana3_3089at 3705.339 kb on + strand, within Shewana3_3089at 3705.452 kb on + strand, within Shewana3_3089at 3705.469 kb on - strand, within Shewana3_3089at 3705.532 kb on - strand, within Shewana3_3089at 3705.820 kb on + strand, within Shewana3_3089at 3705.900 kb on + strand, within Shewana3_3089at 3705.900 kb on + strand, within Shewana3_3089at 3706.120 kb on + strandat 3706.253 kb on - strandat 3706.303 kb on + strandat 3706.362 kb on + strandat 3706.367 kb on + strandat 3706.443 kb on + strandat 3706.641 kb on - strand, within Shewana3_3090at 3706.774 kb on - strand, within Shewana3_3090at 3706.860 kb on - strand, within Shewana3_3090

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,703,571 - Shewana3_3088 0.73 -0.6
3,703,689 + Shewana3_3088 0.79 +0.3
3,703,697 - Shewana3_3088 0.79 +0.1
3,704,235 - +1.4
3,704,730 - Shewana3_3089 0.11 +0.5
3,704,796 + Shewana3_3089 0.16 +1.1
3,704,827 + Shewana3_3089 0.18 +4.2
3,705,019 + Shewana3_3089 0.30 +1.0
3,705,055 - Shewana3_3089 0.32 +0.2
3,705,339 + Shewana3_3089 0.51 +1.8
3,705,452 + Shewana3_3089 0.58 +0.4
3,705,469 - Shewana3_3089 0.59 +1.9
3,705,532 - Shewana3_3089 0.63 +2.1
3,705,820 + Shewana3_3089 0.82 -2.1
3,705,900 + Shewana3_3089 0.87 +1.6
3,705,900 + Shewana3_3089 0.87 +0.7
3,706,120 + +0.3
3,706,253 - -0.2
3,706,303 + +1.2
3,706,362 + +0.3
3,706,367 + -1.8
3,706,443 + +1.6
3,706,641 - Shewana3_3090 0.16 +0.0
3,706,774 - Shewana3_3090 0.29 +1.0
3,706,860 - Shewana3_3090 0.37 -3.1

Or see this region's nucleotide sequence