Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3019

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3018 and Shewana3_3019 are separated by 288 nucleotidesShewana3_3019 and Shewana3_3020 are separated by 101 nucleotides Shewana3_3018: Shewana3_3018 - signal recognition particle protein (RefSeq), at 3,623,855 to 3,625,228 _3018 Shewana3_3019: Shewana3_3019 - cytochrome c assembly protein (RefSeq), at 3,625,517 to 3,626,305 _3019 Shewana3_3020: Shewana3_3020 - hypothetical protein (RefSeq), at 3,626,407 to 3,627,678 _3020 Position (kb) 3625 3626 3627Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3625.361 kb on + strandat 3625.486 kb on + strandat 3625.585 kb on + strandat 3625.796 kb on + strand, within Shewana3_3019at 3625.818 kb on + strand, within Shewana3_3019at 3625.892 kb on + strand, within Shewana3_3019at 3625.902 kb on + strandat 3625.932 kb on - strand, within Shewana3_3019at 3626.191 kb on + strand, within Shewana3_3019at 3626.191 kb on + strand, within Shewana3_3019at 3626.232 kb on - strandat 3626.249 kb on + strandat 3626.424 kb on - strandat 3626.501 kb on + strandat 3626.515 kb on + strandat 3626.838 kb on - strand, within Shewana3_3020at 3626.900 kb on + strand, within Shewana3_3020at 3626.940 kb on - strand, within Shewana3_3020

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,625,361 + -1.2
3,625,486 + -2.5
3,625,585 + -2.3
3,625,796 + Shewana3_3019 0.35 -5.4
3,625,818 + Shewana3_3019 0.38 -3.0
3,625,892 + Shewana3_3019 0.48 -2.5
3,625,902 + +0.6
3,625,932 - Shewana3_3019 0.53 -3.8
3,626,191 + Shewana3_3019 0.85 -1.2
3,626,191 + Shewana3_3019 0.85 -4.9
3,626,232 - -4.9
3,626,249 + -5.6
3,626,424 - -0.6
3,626,501 + -2.2
3,626,515 + -2.2
3,626,838 - Shewana3_3020 0.34 -0.8
3,626,900 + Shewana3_3020 0.39 +1.9
3,626,940 - Shewana3_3020 0.42 -2.3

Or see this region's nucleotide sequence