Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2988 and Shewana3_2989 are separated by 80 nucleotides Shewana3_2989 and Shewana3_2990 are separated by 312 nucleotides
Shewana3_2988: Shewana3_2988 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,593,167 to 3,594,468
_2988
Shewana3_2989: Shewana3_2989 - hypothetical protein (RefSeq), at 3,594,549 to 3,595,844
_2989
Shewana3_2990: Shewana3_2990 - hypothetical protein (RefSeq), at 3,596,157 to 3,597,044
_2990
Position (kb)
3594
3595
3596 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3593.652 kb on - strand, within Shewana3_2988 at 3593.897 kb on + strand, within Shewana3_2988 at 3593.935 kb on + strand, within Shewana3_2988 at 3594.428 kb on + strand at 3594.447 kb on - strand at 3594.518 kb on + strand at 3594.708 kb on - strand, within Shewana3_2989 at 3594.730 kb on - strand, within Shewana3_2989 at 3595.063 kb on - strand, within Shewana3_2989 at 3595.105 kb on - strand, within Shewana3_2989 at 3595.150 kb on - strand, within Shewana3_2989 at 3595.150 kb on - strand, within Shewana3_2989 at 3595.195 kb on - strand, within Shewana3_2989 at 3595.233 kb on - strand, within Shewana3_2989 at 3595.249 kb on + strand, within Shewana3_2989 at 3595.415 kb on - strand, within Shewana3_2989 at 3595.475 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3596.060 kb on + strand at 3596.073 kb on + strand at 3596.163 kb on - strand at 3596.299 kb on - strand, within Shewana3_2990 at 3596.454 kb on - strand, within Shewana3_2990 at 3596.571 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,593,652 - Shewana3_2988 0.37 +1.5 3,593,897 + Shewana3_2988 0.56 +2.2 3,593,935 + Shewana3_2988 0.59 +2.4 3,594,428 + +0.5 3,594,447 - +0.8 3,594,518 + +1.6 3,594,708 - Shewana3_2989 0.12 -0.6 3,594,730 - Shewana3_2989 0.14 -1.3 3,595,063 - Shewana3_2989 0.40 -0.9 3,595,105 - Shewana3_2989 0.43 +0.4 3,595,150 - Shewana3_2989 0.46 +0.2 3,595,150 - Shewana3_2989 0.46 -0.9 3,595,195 - Shewana3_2989 0.50 -2.0 3,595,233 - Shewana3_2989 0.53 -2.1 3,595,249 + Shewana3_2989 0.54 +0.8 3,595,415 - Shewana3_2989 0.67 -0.2 3,595,475 - Shewana3_2989 0.71 +1.8 3,595,591 - Shewana3_2989 0.80 +0.5 3,595,591 - Shewana3_2989 0.80 +0.8 3,595,644 - Shewana3_2989 0.84 +1.1 3,595,644 - Shewana3_2989 0.84 -0.8 3,596,060 + +0.3 3,596,073 + +1.2 3,596,163 - -0.0 3,596,299 - Shewana3_2990 0.16 +1.7 3,596,454 - Shewana3_2990 0.33 -0.4 3,596,571 + Shewana3_2990 0.47 -0.6 3,596,837 + Shewana3_2990 0.77 +1.0 3,596,837 + Shewana3_2990 0.77 -1.0 3,596,837 + Shewana3_2990 0.77 +0.2
Or see this region's nucleotide sequence