Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2986

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2985 and Shewana3_2986 are separated by 361 nucleotidesShewana3_2986 and Shewana3_2987 are separated by 473 nucleotides Shewana3_2985: Shewana3_2985 - ROK family protein (RefSeq), at 3,587,809 to 3,588,600 _2985 Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776 _2986 Shewana3_2987: Shewana3_2987 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,591,250 to 3,592,818 _2987 Position (kb) 3588 3589 3590 3591Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3588.013 kb on - strand, within Shewana3_2985at 3588.028 kb on + strand, within Shewana3_2985at 3588.239 kb on - strand, within Shewana3_2985at 3588.249 kb on - strand, within Shewana3_2985at 3588.353 kb on - strand, within Shewana3_2985at 3588.510 kb on - strand, within Shewana3_2985at 3588.786 kb on - strandat 3588.863 kb on - strandat 3589.031 kb on + strandat 3589.116 kb on - strandat 3589.287 kb on + strand, within Shewana3_2986at 3589.338 kb on + strand, within Shewana3_2986at 3589.645 kb on + strand, within Shewana3_2986at 3589.724 kb on + strand, within Shewana3_2986at 3589.724 kb on + strand, within Shewana3_2986at 3589.729 kb on + strand, within Shewana3_2986at 3589.769 kb on + strand, within Shewana3_2986at 3589.882 kb on + strand, within Shewana3_2986at 3589.882 kb on + strand, within Shewana3_2986at 3589.890 kb on - strand, within Shewana3_2986at 3589.911 kb on + strand, within Shewana3_2986at 3590.158 kb on + strand, within Shewana3_2986at 3590.282 kb on + strand, within Shewana3_2986at 3590.300 kb on - strand, within Shewana3_2986at 3590.570 kb on + strand, within Shewana3_2986at 3590.570 kb on + strand, within Shewana3_2986at 3590.578 kb on - strand, within Shewana3_2986at 3590.618 kb on - strandat 3590.680 kb on + strandat 3590.688 kb on - strandat 3590.704 kb on + strandat 3590.704 kb on + strandat 3590.766 kb on - strandat 3590.784 kb on - strandat 3590.807 kb on - strandat 3590.844 kb on - strandat 3591.256 kb on - strandat 3591.258 kb on + strandat 3591.263 kb on + strandat 3591.266 kb on - strandat 3591.304 kb on - strandat 3591.322 kb on + strandat 3591.467 kb on - strand, within Shewana3_2987at 3591.613 kb on - strand, within Shewana3_2987at 3591.637 kb on + strand, within Shewana3_2987at 3591.745 kb on + strand, within Shewana3_2987at 3591.774 kb on - strand, within Shewana3_2987

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
3,588,013 - Shewana3_2985 0.26 -0.2
3,588,028 + Shewana3_2985 0.28 +1.6
3,588,239 - Shewana3_2985 0.54 +1.3
3,588,249 - Shewana3_2985 0.56 -0.2
3,588,353 - Shewana3_2985 0.69 +0.9
3,588,510 - Shewana3_2985 0.89 +1.4
3,588,786 - +0.7
3,588,863 - -1.5
3,589,031 + +0.5
3,589,116 - +0.7
3,589,287 + Shewana3_2986 0.18 +1.5
3,589,338 + Shewana3_2986 0.21 +2.9
3,589,645 + Shewana3_2986 0.38 +0.3
3,589,724 + Shewana3_2986 0.42 +0.3
3,589,724 + Shewana3_2986 0.42 -1.8
3,589,729 + Shewana3_2986 0.42 -0.9
3,589,769 + Shewana3_2986 0.44 +1.3
3,589,882 + Shewana3_2986 0.51 +0.8
3,589,882 + Shewana3_2986 0.51 +0.6
3,589,890 - Shewana3_2986 0.51 +2.8
3,589,911 + Shewana3_2986 0.52 +2.2
3,590,158 + Shewana3_2986 0.66 -0.1
3,590,282 + Shewana3_2986 0.73 +0.8
3,590,300 - Shewana3_2986 0.74 -0.9
3,590,570 + Shewana3_2986 0.89 -1.3
3,590,570 + Shewana3_2986 0.89 +1.0
3,590,578 - Shewana3_2986 0.89 +0.4
3,590,618 - +1.0
3,590,680 + -0.1
3,590,688 - +0.6
3,590,704 + -0.5
3,590,704 + +0.5
3,590,766 - -0.5
3,590,784 - -1.5
3,590,807 - +0.8
3,590,844 - -0.3
3,591,256 - +0.4
3,591,258 + -0.6
3,591,263 + +1.2
3,591,266 - -0.4
3,591,304 - +0.9
3,591,322 + +0.4
3,591,467 - Shewana3_2987 0.14 -0.6
3,591,613 - Shewana3_2987 0.23 -0.7
3,591,637 + Shewana3_2987 0.25 -2.1
3,591,745 + Shewana3_2987 0.32 +0.4
3,591,774 - Shewana3_2987 0.33 +0.8

Or see this region's nucleotide sequence