Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2936

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2935 and Shewana3_2936 are separated by 509 nucleotidesShewana3_2936 and Shewana3_2937 are separated by 58 nucleotidesShewana3_2937 and Shewana3_2938 are separated by 306 nucleotides Shewana3_2935: Shewana3_2935 - 4-alpha-glucanotransferase (RefSeq), at 3,523,935 to 3,526,340 _2935 Shewana3_2936: Shewana3_2936 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,526,850 to 3,527,485 _2936 Shewana3_2937: Shewana3_2937 - MarR family transcriptional regulator (RefSeq), at 3,527,544 to 3,528,041 _2937 Shewana3_2938: Shewana3_2938 - iron-containing alcohol dehydrogenase (RefSeq), at 3,528,348 to 3,529,496 _2938 Position (kb) 3526 3527 3528Strain fitness (log2 ratio) -2 -1 0 1at 3525.946 kb on + strand, within Shewana3_2935at 3526.007 kb on + strand, within Shewana3_2935at 3526.272 kb on + strandat 3526.275 kb on - strandat 3526.371 kb on + strandat 3526.507 kb on - strandat 3526.577 kb on - strandat 3526.964 kb on + strand, within Shewana3_2936at 3526.977 kb on + strand, within Shewana3_2936at 3527.015 kb on + strand, within Shewana3_2936at 3527.040 kb on + strand, within Shewana3_2936at 3527.273 kb on + strand, within Shewana3_2936at 3527.328 kb on + strand, within Shewana3_2936at 3527.328 kb on + strand, within Shewana3_2936at 3527.336 kb on - strand, within Shewana3_2936at 3527.376 kb on - strand, within Shewana3_2936at 3527.383 kb on + strand, within Shewana3_2936at 3527.388 kb on + strand, within Shewana3_2936at 3527.391 kb on - strand, within Shewana3_2936at 3527.508 kb on + strandat 3527.585 kb on - strandat 3527.602 kb on + strand, within Shewana3_2937at 3527.980 kb on + strand, within Shewana3_2937at 3528.259 kb on - strandat 3528.473 kb on - strand, within Shewana3_2938

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,525,946 + Shewana3_2935 0.84 +0.5
3,526,007 + Shewana3_2935 0.86 +1.5
3,526,272 + +1.5
3,526,275 - +0.4
3,526,371 + -0.3
3,526,507 - +0.0
3,526,577 - +0.5
3,526,964 + Shewana3_2936 0.18 -0.1
3,526,977 + Shewana3_2936 0.20 -0.6
3,527,015 + Shewana3_2936 0.26 -0.6
3,527,040 + Shewana3_2936 0.30 +0.6
3,527,273 + Shewana3_2936 0.67 -1.5
3,527,328 + Shewana3_2936 0.75 +0.0
3,527,328 + Shewana3_2936 0.75 -0.9
3,527,336 - Shewana3_2936 0.76 -1.9
3,527,376 - Shewana3_2936 0.83 +0.4
3,527,383 + Shewana3_2936 0.84 -0.8
3,527,388 + Shewana3_2936 0.85 -0.5
3,527,391 - Shewana3_2936 0.85 -0.1
3,527,508 + -0.9
3,527,585 - -1.0
3,527,602 + Shewana3_2937 0.12 -0.7
3,527,980 + Shewana3_2937 0.88 -1.3
3,528,259 - +0.6
3,528,473 - Shewana3_2938 0.11 +0.1

Or see this region's nucleotide sequence