Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2865 and Shewana3_2866 are separated by 61 nucleotides Shewana3_2866 and Shewana3_2867 are separated by 140 nucleotides Shewana3_2867 and Shewana3_2868 are separated by 548 nucleotides Shewana3_2868 and Shewana3_2869 are separated by 240 nucleotides
Shewana3_2865: Shewana3_2865 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,036 to 3,425,662
_2865
Shewana3_2866: Shewana3_2866 - glutathione S-transferase domain-containing protein (RefSeq), at 3,425,724 to 3,426,392
_2866
Shewana3_2867: Shewana3_2867 - Fmu (Sun) domain-containing protein (RefSeq), at 3,426,533 to 3,427,942
_2867
Shewana3_2868: Shewana3_2868 - hypothetical protein (RefSeq), at 3,428,491 to 3,428,655
_2868
Shewana3_2869: Shewana3_2869 - hypothetical protein (RefSeq), at 3,428,896 to 3,432,021
_2869
Position (kb)
3426
3427
3428 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3425.616 kb on - strand at 3425.916 kb on - strand, within Shewana3_2866 at 3425.926 kb on - strand, within Shewana3_2866 at 3425.974 kb on - strand, within Shewana3_2866 at 3426.236 kb on + strand, within Shewana3_2866 at 3426.286 kb on + strand, within Shewana3_2866 at 3426.346 kb on + strand at 3426.476 kb on + strand at 3426.484 kb on - strand at 3426.659 kb on - strand at 3426.743 kb on - strand, within Shewana3_2867 at 3426.969 kb on + strand, within Shewana3_2867 at 3427.233 kb on + strand, within Shewana3_2867 at 3427.233 kb on + strand, within Shewana3_2867 at 3427.328 kb on + strand, within Shewana3_2867 at 3428.547 kb on + strand, within Shewana3_2868 at 3428.612 kb on - strand, within Shewana3_2868 at 3428.727 kb on + strand at 3428.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,425,616 - +0.2 3,425,916 - Shewana3_2866 0.29 -0.3 3,425,926 - Shewana3_2866 0.30 -0.9 3,425,974 - Shewana3_2866 0.37 -0.3 3,426,236 + Shewana3_2866 0.77 +1.1 3,426,286 + Shewana3_2866 0.84 -0.8 3,426,346 + -0.1 3,426,476 + -0.1 3,426,484 - +0.1 3,426,659 - +0.8 3,426,743 - Shewana3_2867 0.15 -0.0 3,426,969 + Shewana3_2867 0.31 +1.6 3,427,233 + Shewana3_2867 0.50 -1.7 3,427,233 + Shewana3_2867 0.50 +0.9 3,427,328 + Shewana3_2867 0.56 +0.2 3,428,547 + Shewana3_2868 0.34 -0.7 3,428,612 - Shewana3_2868 0.73 -2.8 3,428,727 + -2.0 3,428,736 - +2.1
Or see this region's nucleotide sequence