Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2769 and Shewana3_2770 are separated by 163 nucleotides Shewana3_2770 and Shewana3_2771 are separated by 135 nucleotides
Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) , at 3,307,341 to 3,308,498
_2769
Shewana3_2770: Shewana3_2770 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,308,662 to 3,310,161
_2770
Shewana3_2771: Shewana3_2771 - acetyl-CoA acetyltransferases (RefSeq), at 3,310,297 to 3,311,487
_2771
Position (kb)
3308
3309
3310
3311 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3307.728 kb on + strand, within Shewana3_2769 at 3307.728 kb on + strand, within Shewana3_2769 at 3307.736 kb on - strand, within Shewana3_2769 at 3307.736 kb on - strand, within Shewana3_2769 at 3307.845 kb on + strand, within Shewana3_2769 at 3307.985 kb on - strand, within Shewana3_2769 at 3308.002 kb on + strand, within Shewana3_2769 at 3308.010 kb on - strand, within Shewana3_2769 at 3308.178 kb on - strand, within Shewana3_2769 at 3308.184 kb on - strand, within Shewana3_2769 at 3308.186 kb on + strand, within Shewana3_2769 at 3308.555 kb on - strand at 3308.639 kb on + strand at 3308.678 kb on - strand at 3308.757 kb on - strand at 3308.956 kb on - strand, within Shewana3_2770 at 3308.956 kb on - strand, within Shewana3_2770 at 3308.956 kb on - strand, within Shewana3_2770 at 3309.041 kb on + strand, within Shewana3_2770 at 3309.049 kb on - strand, within Shewana3_2770 at 3309.199 kb on + strand, within Shewana3_2770 at 3309.207 kb on - strand, within Shewana3_2770 at 3309.454 kb on - strand, within Shewana3_2770 at 3309.870 kb on + strand, within Shewana3_2770 at 3309.944 kb on - strand, within Shewana3_2770 at 3309.944 kb on - strand, within Shewana3_2770 at 3309.965 kb on + strand, within Shewana3_2770 at 3310.023 kb on - strand at 3310.136 kb on + strand at 3310.191 kb on + strand at 3310.212 kb on - strand at 3310.279 kb on - strand at 3310.350 kb on - strand at 3310.372 kb on + strand at 3310.380 kb on - strand at 3310.382 kb on - strand at 3310.652 kb on - strand, within Shewana3_2771 at 3310.652 kb on - strand, within Shewana3_2771 at 3311.022 kb on + strand, within Shewana3_2771 at 3311.022 kb on + strand, within Shewana3_2771 at 3311.153 kb on - strand, within Shewana3_2771
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,307,728 + Shewana3_2769 0.33 -2.3 3,307,728 + Shewana3_2769 0.33 +0.4 3,307,736 - Shewana3_2769 0.34 -1.2 3,307,736 - Shewana3_2769 0.34 -1.8 3,307,845 + Shewana3_2769 0.44 -1.0 3,307,985 - Shewana3_2769 0.56 -0.0 3,308,002 + Shewana3_2769 0.57 -3.2 3,308,010 - Shewana3_2769 0.58 +0.3 3,308,178 - Shewana3_2769 0.72 -0.5 3,308,184 - Shewana3_2769 0.73 -1.5 3,308,186 + Shewana3_2769 0.73 -1.3 3,308,555 - -0.4 3,308,639 + +0.1 3,308,678 - -0.2 3,308,757 - +0.2 3,308,956 - Shewana3_2770 0.20 +2.0 3,308,956 - Shewana3_2770 0.20 +0.0 3,308,956 - Shewana3_2770 0.20 +0.2 3,309,041 + Shewana3_2770 0.25 +0.1 3,309,049 - Shewana3_2770 0.26 +0.2 3,309,199 + Shewana3_2770 0.36 -0.6 3,309,207 - Shewana3_2770 0.36 -1.5 3,309,454 - Shewana3_2770 0.53 -1.4 3,309,870 + Shewana3_2770 0.81 -0.6 3,309,944 - Shewana3_2770 0.85 -0.3 3,309,944 - Shewana3_2770 0.85 -0.5 3,309,965 + Shewana3_2770 0.87 +0.5 3,310,023 - -0.4 3,310,136 + -0.9 3,310,191 + +0.1 3,310,212 - -0.4 3,310,279 - -0.9 3,310,350 - +0.0 3,310,372 + -2.4 3,310,380 - -1.9 3,310,382 - -2.6 3,310,652 - Shewana3_2771 0.30 -0.8 3,310,652 - Shewana3_2771 0.30 -3.1 3,311,022 + Shewana3_2771 0.61 -0.2 3,311,022 + Shewana3_2771 0.61 -1.4 3,311,153 - Shewana3_2771 0.72 -2.3
Or see this region's nucleotide sequence