Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2770

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2769 and Shewana3_2770 are separated by 163 nucleotidesShewana3_2770 and Shewana3_2771 are separated by 135 nucleotides Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data), at 3,307,341 to 3,308,498 _2769 Shewana3_2770: Shewana3_2770 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,308,662 to 3,310,161 _2770 Shewana3_2771: Shewana3_2771 - acetyl-CoA acetyltransferases (RefSeq), at 3,310,297 to 3,311,487 _2771 Position (kb) 3308 3309 3310 3311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3307.728 kb on + strand, within Shewana3_2769at 3307.728 kb on + strand, within Shewana3_2769at 3307.736 kb on - strand, within Shewana3_2769at 3307.736 kb on - strand, within Shewana3_2769at 3307.845 kb on + strand, within Shewana3_2769at 3307.985 kb on - strand, within Shewana3_2769at 3308.002 kb on + strand, within Shewana3_2769at 3308.010 kb on - strand, within Shewana3_2769at 3308.178 kb on - strand, within Shewana3_2769at 3308.184 kb on - strand, within Shewana3_2769at 3308.186 kb on + strand, within Shewana3_2769at 3308.555 kb on - strandat 3308.639 kb on + strandat 3308.678 kb on - strandat 3308.757 kb on - strandat 3308.956 kb on - strand, within Shewana3_2770at 3308.956 kb on - strand, within Shewana3_2770at 3308.956 kb on - strand, within Shewana3_2770at 3309.041 kb on + strand, within Shewana3_2770at 3309.049 kb on - strand, within Shewana3_2770at 3309.199 kb on + strand, within Shewana3_2770at 3309.207 kb on - strand, within Shewana3_2770at 3309.454 kb on - strand, within Shewana3_2770at 3309.870 kb on + strand, within Shewana3_2770at 3309.944 kb on - strand, within Shewana3_2770at 3309.944 kb on - strand, within Shewana3_2770at 3309.965 kb on + strand, within Shewana3_2770at 3310.023 kb on - strandat 3310.136 kb on + strandat 3310.191 kb on + strandat 3310.212 kb on - strandat 3310.279 kb on - strandat 3310.350 kb on - strandat 3310.372 kb on + strandat 3310.380 kb on - strandat 3310.382 kb on - strandat 3310.652 kb on - strand, within Shewana3_2771at 3310.652 kb on - strand, within Shewana3_2771at 3311.022 kb on + strand, within Shewana3_2771at 3311.022 kb on + strand, within Shewana3_2771at 3311.153 kb on - strand, within Shewana3_2771

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,307,728 + Shewana3_2769 0.33 -2.3
3,307,728 + Shewana3_2769 0.33 +0.4
3,307,736 - Shewana3_2769 0.34 -1.2
3,307,736 - Shewana3_2769 0.34 -1.8
3,307,845 + Shewana3_2769 0.44 -1.0
3,307,985 - Shewana3_2769 0.56 -0.0
3,308,002 + Shewana3_2769 0.57 -3.2
3,308,010 - Shewana3_2769 0.58 +0.3
3,308,178 - Shewana3_2769 0.72 -0.5
3,308,184 - Shewana3_2769 0.73 -1.5
3,308,186 + Shewana3_2769 0.73 -1.3
3,308,555 - -0.4
3,308,639 + +0.1
3,308,678 - -0.2
3,308,757 - +0.2
3,308,956 - Shewana3_2770 0.20 +2.0
3,308,956 - Shewana3_2770 0.20 +0.0
3,308,956 - Shewana3_2770 0.20 +0.2
3,309,041 + Shewana3_2770 0.25 +0.1
3,309,049 - Shewana3_2770 0.26 +0.2
3,309,199 + Shewana3_2770 0.36 -0.6
3,309,207 - Shewana3_2770 0.36 -1.5
3,309,454 - Shewana3_2770 0.53 -1.4
3,309,870 + Shewana3_2770 0.81 -0.6
3,309,944 - Shewana3_2770 0.85 -0.3
3,309,944 - Shewana3_2770 0.85 -0.5
3,309,965 + Shewana3_2770 0.87 +0.5
3,310,023 - -0.4
3,310,136 + -0.9
3,310,191 + +0.1
3,310,212 - -0.4
3,310,279 - -0.9
3,310,350 - +0.0
3,310,372 + -2.4
3,310,380 - -1.9
3,310,382 - -2.6
3,310,652 - Shewana3_2771 0.30 -0.8
3,310,652 - Shewana3_2771 0.30 -3.1
3,311,022 + Shewana3_2771 0.61 -0.2
3,311,022 + Shewana3_2771 0.61 -1.4
3,311,153 - Shewana3_2771 0.72 -2.3

Or see this region's nucleotide sequence