Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2723 and Shewana3_2724 are separated by 756 nucleotides Shewana3_2724 and Shewana3_2725 are separated by 151 nucleotides
Shewana3_2723: Shewana3_2723 - hypothetical protein (RefSeq), at 3,254,148 to 3,255,077
_2723
Shewana3_2724: Shewana3_2724 - GCN5-related N-acetyltransferase (RefSeq), at 3,255,834 to 3,256,268
_2724
Shewana3_2725: Shewana3_2725 - hypothetical protein (RefSeq), at 3,256,420 to 3,257,145
_2725
Position (kb)
3255
3256
3257 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3254.905 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3255.142 kb on + strand at 3255.169 kb on + strand at 3255.270 kb on + strand at 3255.841 kb on + strand at 3255.869 kb on + strand at 3255.974 kb on - strand, within Shewana3_2724 at 3256.011 kb on + strand, within Shewana3_2724 at 3256.128 kb on + strand, within Shewana3_2724 at 3256.255 kb on + strand at 3256.298 kb on - strand at 3256.327 kb on + strand at 3256.444 kb on + strand at 3256.618 kb on - strand, within Shewana3_2725 at 3256.634 kb on + strand, within Shewana3_2725 at 3256.653 kb on + strand, within Shewana3_2725 at 3256.731 kb on + strand, within Shewana3_2725 at 3256.739 kb on - strand, within Shewana3_2725 at 3256.765 kb on - strand, within Shewana3_2725 at 3256.825 kb on + strand, within Shewana3_2725 at 3256.911 kb on + strand, within Shewana3_2725 at 3256.929 kb on - strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.982 kb on + strand, within Shewana3_2725 at 3256.990 kb on - strand, within Shewana3_2725 at 3256.990 kb on - strand, within Shewana3_2725 at 3257.046 kb on + strand, within Shewana3_2725 at 3257.110 kb on + strand at 3257.152 kb on + strand at 3257.152 kb on + strand at 3257.204 kb on + strand at 3257.204 kb on + strand at 3257.204 kb on + strand at 3257.205 kb on + strand at 3257.212 kb on - strand at 3257.240 kb on + strand at 3257.240 kb on + strand at 3257.248 kb on - strand at 3257.248 kb on - strand at 3257.248 kb on - strand at 3257.266 kb on + strand at 3257.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,254,905 + Shewana3_2723 0.81 -0.3 3,254,928 + Shewana3_2723 0.84 -1.1 3,254,928 + Shewana3_2723 0.84 -0.1 3,255,142 + -0.0 3,255,169 + -0.6 3,255,270 + +0.5 3,255,841 + +0.7 3,255,869 + -0.1 3,255,974 - Shewana3_2724 0.32 -1.5 3,256,011 + Shewana3_2724 0.41 +1.0 3,256,128 + Shewana3_2724 0.68 -0.1 3,256,255 + -0.1 3,256,298 - +2.6 3,256,327 + +0.7 3,256,444 + +1.3 3,256,618 - Shewana3_2725 0.27 -0.7 3,256,634 + Shewana3_2725 0.29 -0.2 3,256,653 + Shewana3_2725 0.32 +1.1 3,256,731 + Shewana3_2725 0.43 +0.4 3,256,739 - Shewana3_2725 0.44 -0.3 3,256,765 - Shewana3_2725 0.48 -1.5 3,256,825 + Shewana3_2725 0.56 +0.8 3,256,911 + Shewana3_2725 0.68 +0.9 3,256,929 - Shewana3_2725 0.70 -0.5 3,256,982 + Shewana3_2725 0.77 +0.4 3,256,982 + Shewana3_2725 0.77 -4.4 3,256,982 + Shewana3_2725 0.77 +0.3 3,256,990 - Shewana3_2725 0.79 +2.1 3,256,990 - Shewana3_2725 0.79 +1.6 3,257,046 + Shewana3_2725 0.86 +0.1 3,257,110 + -0.2 3,257,152 + +1.2 3,257,152 + -1.2 3,257,204 + -1.1 3,257,204 + +1.1 3,257,204 + -1.1 3,257,205 + -1.1 3,257,212 - +4.1 3,257,240 + -0.1 3,257,240 + -0.9 3,257,248 - -0.8 3,257,248 - -0.1 3,257,248 - +1.3 3,257,266 + -2.7 3,257,268 + -0.6
Or see this region's nucleotide sequence