Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2720 and Shewana3_2721 are separated by 155 nucleotides Shewana3_2721 and Shewana3_2722 are separated by 52 nucleotides Shewana3_2722 and Shewana3_2723 are separated by 93 nucleotides
Shewana3_2720: Shewana3_2720 - hypothetical protein (RefSeq), at 3,251,958 to 3,252,563
_2720
Shewana3_2721: Shewana3_2721 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,252,719 to 3,253,114
_2721
Shewana3_2722: Shewana3_2722 - LysR family transcriptional regulator (RefSeq), at 3,253,167 to 3,254,054
_2722
Shewana3_2723: Shewana3_2723 - hypothetical protein (RefSeq), at 3,254,148 to 3,255,077
_2723
Position (kb)
3253
3254
3255 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3252.238 kb on + strand, within Shewana3_2720 at 3252.246 kb on - strand, within Shewana3_2720 at 3252.296 kb on - strand, within Shewana3_2720 at 3252.306 kb on - strand, within Shewana3_2720 at 3252.361 kb on - strand, within Shewana3_2720 at 3252.361 kb on - strand, within Shewana3_2720 at 3252.518 kb on - strand at 3252.540 kb on + strand at 3252.715 kb on + strand at 3252.740 kb on - strand at 3252.798 kb on - strand, within Shewana3_2721 at 3252.802 kb on - strand, within Shewana3_2721 at 3252.829 kb on - strand, within Shewana3_2721 at 3253.005 kb on + strand, within Shewana3_2721 at 3253.013 kb on - strand, within Shewana3_2721 at 3253.291 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.306 kb on + strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.314 kb on - strand, within Shewana3_2722 at 3253.548 kb on - strand, within Shewana3_2722 at 3253.634 kb on - strand, within Shewana3_2722 at 3253.810 kb on + strand, within Shewana3_2722 at 3253.869 kb on + strand, within Shewana3_2722 at 3253.869 kb on + strand, within Shewana3_2722 at 3253.877 kb on - strand, within Shewana3_2722 at 3253.966 kb on + strand at 3254.253 kb on + strand, within Shewana3_2723 at 3254.253 kb on + strand, within Shewana3_2723 at 3254.259 kb on + strand, within Shewana3_2723 at 3254.339 kb on + strand, within Shewana3_2723 at 3254.494 kb on + strand, within Shewana3_2723 at 3254.494 kb on + strand, within Shewana3_2723 at 3254.585 kb on + strand, within Shewana3_2723 at 3254.585 kb on + strand, within Shewana3_2723 at 3254.585 kb on + strand, within Shewana3_2723 at 3254.616 kb on - strand, within Shewana3_2723 at 3254.775 kb on - strand, within Shewana3_2723 at 3254.808 kb on + strand, within Shewana3_2723 at 3254.905 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723 at 3254.928 kb on + strand, within Shewana3_2723
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,252,238 + Shewana3_2720 0.46 +1.0 3,252,246 - Shewana3_2720 0.48 -1.7 3,252,296 - Shewana3_2720 0.56 +0.8 3,252,306 - Shewana3_2720 0.57 -1.9 3,252,361 - Shewana3_2720 0.67 +0.8 3,252,361 - Shewana3_2720 0.67 -0.0 3,252,518 - -0.4 3,252,540 + -0.2 3,252,715 + +0.3 3,252,740 - +0.8 3,252,798 - Shewana3_2721 0.20 -0.2 3,252,802 - Shewana3_2721 0.21 +1.0 3,252,829 - Shewana3_2721 0.28 +0.8 3,253,005 + Shewana3_2721 0.72 +2.7 3,253,013 - Shewana3_2721 0.74 +1.1 3,253,291 + Shewana3_2722 0.14 -0.2 3,253,306 + Shewana3_2722 0.16 +0.7 3,253,306 + Shewana3_2722 0.16 -0.6 3,253,306 + Shewana3_2722 0.16 +0.9 3,253,306 + Shewana3_2722 0.16 +0.6 3,253,306 + Shewana3_2722 0.16 +0.1 3,253,306 + Shewana3_2722 0.16 +1.4 3,253,306 + Shewana3_2722 0.16 +0.8 3,253,314 - Shewana3_2722 0.17 -0.2 3,253,314 - Shewana3_2722 0.17 +1.6 3,253,314 - Shewana3_2722 0.17 -0.3 3,253,548 - Shewana3_2722 0.43 +0.5 3,253,634 - Shewana3_2722 0.53 -0.0 3,253,810 + Shewana3_2722 0.72 +0.0 3,253,869 + Shewana3_2722 0.79 +0.7 3,253,869 + Shewana3_2722 0.79 +1.1 3,253,877 - Shewana3_2722 0.80 +0.1 3,253,966 + +0.8 3,254,253 + Shewana3_2723 0.11 +1.1 3,254,253 + Shewana3_2723 0.11 +0.7 3,254,259 + Shewana3_2723 0.12 -0.7 3,254,339 + Shewana3_2723 0.21 +0.6 3,254,494 + Shewana3_2723 0.37 +0.0 3,254,494 + Shewana3_2723 0.37 -1.3 3,254,585 + Shewana3_2723 0.47 +1.2 3,254,585 + Shewana3_2723 0.47 +1.4 3,254,585 + Shewana3_2723 0.47 +0.6 3,254,616 - Shewana3_2723 0.50 +0.2 3,254,775 - Shewana3_2723 0.67 +1.0 3,254,808 + Shewana3_2723 0.71 +0.6 3,254,905 + Shewana3_2723 0.81 -0.3 3,254,928 + Shewana3_2723 0.84 -1.1 3,254,928 + Shewana3_2723 0.84 -0.1
Or see this region's nucleotide sequence