Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2682 and Shewana3_2683 are separated by 239 nucleotides Shewana3_2683 and Shewana3_2684 are separated by 270 nucleotides
Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893
_2682
Shewana3_2683: Shewana3_2683 - catalase domain-containing protein (RefSeq), at 3,208,133 to 3,209,131
_2683
Shewana3_2684: Shewana3_2684 - gluconate transporter (RefSeq), at 3,209,402 to 3,210,760
_2684
Position (kb)
3208
3209
3210 Strain fitness (log2 ratio)
-2
-1
0
1 at 3207.200 kb on - strand, within Shewana3_2682 at 3207.342 kb on - strand, within Shewana3_2682 at 3207.532 kb on + strand, within Shewana3_2682 at 3207.539 kb on - strand, within Shewana3_2682 at 3207.551 kb on + strand, within Shewana3_2682 at 3207.584 kb on + strand, within Shewana3_2682 at 3207.613 kb on - strand, within Shewana3_2682 at 3207.644 kb on + strand, within Shewana3_2682 at 3207.673 kb on - strand, within Shewana3_2682 at 3207.692 kb on + strand at 3207.780 kb on - strand at 3208.019 kb on + strand at 3208.021 kb on + strand at 3208.261 kb on - strand, within Shewana3_2683 at 3208.332 kb on - strand, within Shewana3_2683 at 3208.435 kb on + strand, within Shewana3_2683 at 3208.448 kb on - strand, within Shewana3_2683 at 3208.448 kb on - strand, within Shewana3_2683 at 3208.601 kb on + strand, within Shewana3_2683 at 3208.661 kb on - strand, within Shewana3_2683 at 3208.699 kb on - strand, within Shewana3_2683 at 3208.796 kb on - strand, within Shewana3_2683 at 3208.813 kb on + strand, within Shewana3_2683 at 3208.925 kb on + strand, within Shewana3_2683 at 3208.943 kb on - strand, within Shewana3_2683 at 3209.039 kb on + strand at 3209.061 kb on - strand at 3209.281 kb on + strand at 3209.298 kb on + strand at 3209.407 kb on - strand at 3209.407 kb on - strand at 3209.417 kb on + strand at 3209.568 kb on + strand, within Shewana3_2684 at 3209.689 kb on + strand, within Shewana3_2684 at 3209.867 kb on - strand, within Shewana3_2684 at 3209.882 kb on - strand, within Shewana3_2684 at 3210.013 kb on - strand, within Shewana3_2684 at 3210.096 kb on - strand, within Shewana3_2684
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,207,200 - Shewana3_2682 0.44 -1.1 3,207,342 - Shewana3_2682 0.55 +0.3 3,207,532 + Shewana3_2682 0.71 -0.4 3,207,539 - Shewana3_2682 0.71 -0.2 3,207,551 + Shewana3_2682 0.72 -0.3 3,207,584 + Shewana3_2682 0.75 -0.7 3,207,613 - Shewana3_2682 0.77 -0.4 3,207,644 + Shewana3_2682 0.80 -0.6 3,207,673 - Shewana3_2682 0.82 +1.2 3,207,692 + +0.9 3,207,780 - -0.0 3,208,019 + -1.8 3,208,021 + +1.0 3,208,261 - Shewana3_2683 0.13 -0.5 3,208,332 - Shewana3_2683 0.20 +0.7 3,208,435 + Shewana3_2683 0.30 +0.3 3,208,448 - Shewana3_2683 0.32 -0.9 3,208,448 - Shewana3_2683 0.32 -0.9 3,208,601 + Shewana3_2683 0.47 -0.6 3,208,661 - Shewana3_2683 0.53 -0.2 3,208,699 - Shewana3_2683 0.57 -0.1 3,208,796 - Shewana3_2683 0.66 -0.4 3,208,813 + Shewana3_2683 0.68 -1.1 3,208,925 + Shewana3_2683 0.79 -0.1 3,208,943 - Shewana3_2683 0.81 +1.0 3,209,039 + +0.0 3,209,061 - +0.2 3,209,281 + -0.9 3,209,298 + -0.3 3,209,407 - -0.6 3,209,407 - -0.2 3,209,417 + -0.1 3,209,568 + Shewana3_2684 0.12 -1.2 3,209,689 + Shewana3_2684 0.21 -0.0 3,209,867 - Shewana3_2684 0.34 +0.9 3,209,882 - Shewana3_2684 0.35 -1.6 3,210,013 - Shewana3_2684 0.45 -1.5 3,210,096 - Shewana3_2684 0.51 -0.2
Or see this region's nucleotide sequence