Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2683

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2682 and Shewana3_2683 are separated by 239 nucleotidesShewana3_2683 and Shewana3_2684 are separated by 270 nucleotides Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893 _2682 Shewana3_2683: Shewana3_2683 - catalase domain-containing protein (RefSeq), at 3,208,133 to 3,209,131 _2683 Shewana3_2684: Shewana3_2684 - gluconate transporter (RefSeq), at 3,209,402 to 3,210,760 _2684 Position (kb) 3208 3209 3210Strain fitness (log2 ratio) -2 -1 0 1at 3207.200 kb on - strand, within Shewana3_2682at 3207.342 kb on - strand, within Shewana3_2682at 3207.532 kb on + strand, within Shewana3_2682at 3207.539 kb on - strand, within Shewana3_2682at 3207.551 kb on + strand, within Shewana3_2682at 3207.584 kb on + strand, within Shewana3_2682at 3207.613 kb on - strand, within Shewana3_2682at 3207.644 kb on + strand, within Shewana3_2682at 3207.673 kb on - strand, within Shewana3_2682at 3207.692 kb on + strandat 3207.780 kb on - strandat 3208.019 kb on + strandat 3208.021 kb on + strandat 3208.261 kb on - strand, within Shewana3_2683at 3208.332 kb on - strand, within Shewana3_2683at 3208.435 kb on + strand, within Shewana3_2683at 3208.448 kb on - strand, within Shewana3_2683at 3208.448 kb on - strand, within Shewana3_2683at 3208.601 kb on + strand, within Shewana3_2683at 3208.661 kb on - strand, within Shewana3_2683at 3208.699 kb on - strand, within Shewana3_2683at 3208.796 kb on - strand, within Shewana3_2683at 3208.813 kb on + strand, within Shewana3_2683at 3208.925 kb on + strand, within Shewana3_2683at 3208.943 kb on - strand, within Shewana3_2683at 3209.039 kb on + strandat 3209.061 kb on - strandat 3209.281 kb on + strandat 3209.298 kb on + strandat 3209.407 kb on - strandat 3209.407 kb on - strandat 3209.417 kb on + strandat 3209.568 kb on + strand, within Shewana3_2684at 3209.689 kb on + strand, within Shewana3_2684at 3209.867 kb on - strand, within Shewana3_2684at 3209.882 kb on - strand, within Shewana3_2684at 3210.013 kb on - strand, within Shewana3_2684at 3210.096 kb on - strand, within Shewana3_2684

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,207,200 - Shewana3_2682 0.44 -1.1
3,207,342 - Shewana3_2682 0.55 +0.3
3,207,532 + Shewana3_2682 0.71 -0.4
3,207,539 - Shewana3_2682 0.71 -0.2
3,207,551 + Shewana3_2682 0.72 -0.3
3,207,584 + Shewana3_2682 0.75 -0.7
3,207,613 - Shewana3_2682 0.77 -0.4
3,207,644 + Shewana3_2682 0.80 -0.6
3,207,673 - Shewana3_2682 0.82 +1.2
3,207,692 + +0.9
3,207,780 - -0.0
3,208,019 + -1.8
3,208,021 + +1.0
3,208,261 - Shewana3_2683 0.13 -0.5
3,208,332 - Shewana3_2683 0.20 +0.7
3,208,435 + Shewana3_2683 0.30 +0.3
3,208,448 - Shewana3_2683 0.32 -0.9
3,208,448 - Shewana3_2683 0.32 -0.9
3,208,601 + Shewana3_2683 0.47 -0.6
3,208,661 - Shewana3_2683 0.53 -0.2
3,208,699 - Shewana3_2683 0.57 -0.1
3,208,796 - Shewana3_2683 0.66 -0.4
3,208,813 + Shewana3_2683 0.68 -1.1
3,208,925 + Shewana3_2683 0.79 -0.1
3,208,943 - Shewana3_2683 0.81 +1.0
3,209,039 + +0.0
3,209,061 - +0.2
3,209,281 + -0.9
3,209,298 + -0.3
3,209,407 - -0.6
3,209,407 - -0.2
3,209,417 + -0.1
3,209,568 + Shewana3_2684 0.12 -1.2
3,209,689 + Shewana3_2684 0.21 -0.0
3,209,867 - Shewana3_2684 0.34 +0.9
3,209,882 - Shewana3_2684 0.35 -1.6
3,210,013 - Shewana3_2684 0.45 -1.5
3,210,096 - Shewana3_2684 0.51 -0.2

Or see this region's nucleotide sequence