Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2681

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2679 and Shewana3_2680 overlap by 1 nucleotidesShewana3_2680 and Shewana3_2681 are separated by 127 nucleotidesShewana3_2681 and Shewana3_2682 are separated by 232 nucleotides Shewana3_2679: Shewana3_2679 - hypothetical protein (RefSeq), at 3,203,471 to 3,204,085 _2679 Shewana3_2680: Shewana3_2680 - phage SPO1 DNA polymerase domain-containing protein (RefSeq), at 3,204,085 to 3,204,798 _2680 Shewana3_2681: Shewana3_2681 - vibriolysin (RefSeq), at 3,204,926 to 3,206,428 _2681 Shewana3_2682: Shewana3_2682 - CdaR family transcriptional regulator (RefSeq), at 3,206,661 to 3,207,893 _2682 Position (kb) 3204 3205 3206 3207Strain fitness (log2 ratio) -3 -2 -1 0 1at 3204.166 kb on + strand, within Shewana3_2680at 3204.182 kb on - strand, within Shewana3_2680at 3204.401 kb on + strand, within Shewana3_2680at 3204.409 kb on - strand, within Shewana3_2680at 3204.555 kb on + strand, within Shewana3_2680at 3204.555 kb on + strand, within Shewana3_2680at 3204.555 kb on + strand, within Shewana3_2680at 3204.563 kb on - strand, within Shewana3_2680at 3204.664 kb on - strand, within Shewana3_2680at 3204.688 kb on - strand, within Shewana3_2680at 3204.738 kb on + strandat 3204.812 kb on - strandat 3204.875 kb on + strandat 3204.897 kb on - strandat 3204.983 kb on + strandat 3205.155 kb on - strand, within Shewana3_2681at 3205.216 kb on - strand, within Shewana3_2681at 3205.546 kb on + strand, within Shewana3_2681at 3205.559 kb on - strand, within Shewana3_2681at 3205.639 kb on + strand, within Shewana3_2681at 3205.740 kb on + strand, within Shewana3_2681at 3205.748 kb on - strand, within Shewana3_2681at 3205.988 kb on + strand, within Shewana3_2681at 3206.076 kb on + strand, within Shewana3_2681at 3206.298 kb on - strandat 3206.302 kb on + strandat 3206.310 kb on - strandat 3206.396 kb on - strandat 3206.681 kb on - strandat 3206.793 kb on + strand, within Shewana3_2682at 3207.200 kb on - strand, within Shewana3_2682at 3207.342 kb on - strand, within Shewana3_2682

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,204,166 + Shewana3_2680 0.11 -2.2
3,204,182 - Shewana3_2680 0.14 -0.4
3,204,401 + Shewana3_2680 0.44 +0.7
3,204,409 - Shewana3_2680 0.45 +0.9
3,204,555 + Shewana3_2680 0.66 +0.4
3,204,555 + Shewana3_2680 0.66 +0.3
3,204,555 + Shewana3_2680 0.66 -0.0
3,204,563 - Shewana3_2680 0.67 +0.4
3,204,664 - Shewana3_2680 0.81 -1.4
3,204,688 - Shewana3_2680 0.84 +0.7
3,204,738 + +0.7
3,204,812 - +0.0
3,204,875 + -0.5
3,204,897 - +0.5
3,204,983 + +1.4
3,205,155 - Shewana3_2681 0.15 -3.0
3,205,216 - Shewana3_2681 0.19 -1.8
3,205,546 + Shewana3_2681 0.41 +1.2
3,205,559 - Shewana3_2681 0.42 -0.3
3,205,639 + Shewana3_2681 0.47 +0.6
3,205,740 + Shewana3_2681 0.54 +0.7
3,205,748 - Shewana3_2681 0.55 -2.2
3,205,988 + Shewana3_2681 0.71 +1.7
3,206,076 + Shewana3_2681 0.77 -1.0
3,206,298 - -0.4
3,206,302 + +1.2
3,206,310 - +0.9
3,206,396 - -1.6
3,206,681 - -1.0
3,206,793 + Shewana3_2682 0.11 +0.0
3,207,200 - Shewana3_2682 0.44 -1.1
3,207,342 - Shewana3_2682 0.55 +0.3

Or see this region's nucleotide sequence