Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2642

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2641 and ffs are separated by 51 nucleotidesffs and Shewana3_2642 are separated by 217 nucleotidesShewana3_2642 and Shewana3_2643 are separated by 205 nucleotides Shewana3_2641: Shewana3_2641 - phage integrase family protein (RefSeq), at 3,154,100 to 3,155,380 _2641 Shewana3_R0111: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 3,155,432 to 3,155,547 ffs Shewana3_2642: Shewana3_2642 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 3,155,765 to 3,156,130 _2642 Shewana3_2643: Shewana3_2643 - methionine gamma-lyase (RefSeq), at 3,156,336 to 3,157,529 _2643 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -1 0 1 2at 3155.008 kb on + strand, within Shewana3_2641at 3155.316 kb on - strandat 3155.808 kb on - strand, within Shewana3_2642at 3155.893 kb on - strand, within Shewana3_2642at 3155.922 kb on - strand, within Shewana3_2642at 3156.382 kb on + strandat 3156.397 kb on - strandat 3156.533 kb on + strand, within Shewana3_2643at 3156.666 kb on - strand, within Shewana3_2643at 3156.718 kb on - strand, within Shewana3_2643at 3156.887 kb on - strand, within Shewana3_2643at 3156.917 kb on - strand, within Shewana3_2643

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,155,008 + Shewana3_2641 0.71 +0.7
3,155,316 - -0.7
3,155,808 - Shewana3_2642 0.12 -1.0
3,155,893 - Shewana3_2642 0.35 -0.1
3,155,922 - Shewana3_2642 0.43 -0.5
3,156,382 + -0.9
3,156,397 - -0.6
3,156,533 + Shewana3_2643 0.16 -0.9
3,156,666 - Shewana3_2643 0.28 +1.2
3,156,718 - Shewana3_2643 0.32 +1.2
3,156,887 - Shewana3_2643 0.46 +2.1
3,156,917 - Shewana3_2643 0.49 -0.7

Or see this region's nucleotide sequence