Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2619 and Shewana3_2620 are separated by 80 nucleotides Shewana3_2620 and Shewana3_2621 are separated by 51 nucleotides Shewana3_2621 and Shewana3_2622 are separated by 2 nucleotides Shewana3_2622 and Shewana3_2623 are separated by 1 nucleotides
Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594
_2619
Shewana3_2620: Shewana3_2620 - diguanylate cyclase (RefSeq), at 3,125,675 to 3,126,184
_2620
Shewana3_2621: Shewana3_2621 - TPR repeat-containing protein (RefSeq), at 3,126,236 to 3,127,483
_2621
Shewana3_2622: Shewana3_2622 - TonB family protein (RefSeq), at 3,127,486 to 3,128,109
_2622
Shewana3_2623: Shewana3_2623 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,128,111 to 3,128,515
_2623
Position (kb) 3126
3127
3128 Strain fitness (log2 ratio) -1
0
1 at 3125.249 kb on - strand, within Shewana3_2619 at 3125.318 kb on + strand, within Shewana3_2619 at 3125.430 kb on + strand at 3125.699 kb on + strand at 3125.893 kb on - strand, within Shewana3_2620 at 3125.964 kb on + strand, within Shewana3_2620
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,125,249 - Shewana3_2619 0.81 -0.8 3,125,318 + Shewana3_2619 0.85 +0.9 3,125,430 + +0.0 3,125,699 + +1.1 3,125,893 - Shewana3_2620 0.43 -0.6 3,125,964 + Shewana3_2620 0.57 -0.3
Or see this region's nucleotide sequence