Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2615 and Shewana3_2616 are separated by 22 nucleotides Shewana3_2616 and Shewana3_2617 are separated by 70 nucleotides Shewana3_2617 and Shewana3_2618 are separated by 73 nucleotides Shewana3_2618 and Shewana3_2619 are separated by 180 nucleotides
Shewana3_2615: Shewana3_2615 - hypothetical protein (RefSeq), at 3,121,980 to 3,122,366
_2615
Shewana3_2616: Shewana3_2616 - RNA-binding S4 domain-containing protein (RefSeq), at 3,122,389 to 3,122,619
_2616
Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226
_2617
Shewana3_2618: Shewana3_2618 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,123,300 to 3,123,578
_2618
Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594
_2619
Position (kb)
3123
3124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3122.301 kb on - strand, within Shewana3_2615 at 3122.550 kb on - strand, within Shewana3_2616 at 3122.833 kb on - strand, within Shewana3_2617 at 3122.873 kb on + strand, within Shewana3_2617 at 3122.890 kb on + strand, within Shewana3_2617 at 3122.920 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3122.921 kb on - strand, within Shewana3_2617 at 3123.067 kb on - strand, within Shewana3_2617 at 3123.069 kb on + strand, within Shewana3_2617 at 3123.079 kb on + strand, within Shewana3_2617 at 3123.151 kb on - strand, within Shewana3_2617 at 3123.173 kb on + strand at 3123.196 kb on + strand at 3123.204 kb on - strand at 3123.343 kb on + strand, within Shewana3_2618 at 3123.507 kb on + strand, within Shewana3_2618 at 3123.523 kb on + strand, within Shewana3_2618 at 3123.531 kb on - strand, within Shewana3_2618 at 3123.536 kb on - strand, within Shewana3_2618 at 3123.697 kb on + strand at 3123.907 kb on - strand at 3124.225 kb on + strand, within Shewana3_2619 at 3124.454 kb on + strand, within Shewana3_2619 at 3124.499 kb on + strand, within Shewana3_2619
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,122,301 - Shewana3_2615 0.83 -0.3 3,122,550 - Shewana3_2616 0.70 -0.9 3,122,833 - Shewana3_2617 0.27 -1.8 3,122,873 + Shewana3_2617 0.34 -0.4 3,122,890 + Shewana3_2617 0.37 -0.9 3,122,920 - Shewana3_2617 0.43 -1.2 3,122,921 - Shewana3_2617 0.43 +2.4 3,122,921 - Shewana3_2617 0.43 +0.1 3,123,067 - Shewana3_2617 0.70 +0.9 3,123,069 + Shewana3_2617 0.71 +0.6 3,123,079 + Shewana3_2617 0.72 +0.4 3,123,151 - Shewana3_2617 0.86 -0.4 3,123,173 + +0.1 3,123,196 + +0.9 3,123,204 - -0.8 3,123,343 + Shewana3_2618 0.15 +1.2 3,123,507 + Shewana3_2618 0.74 +1.2 3,123,523 + Shewana3_2618 0.80 -0.5 3,123,531 - Shewana3_2618 0.83 +1.3 3,123,536 - Shewana3_2618 0.85 +0.7 3,123,697 + +0.7 3,123,907 - +0.0 3,124,225 + Shewana3_2619 0.25 -1.1 3,124,454 + Shewana3_2619 0.38 -1.0 3,124,499 + Shewana3_2619 0.40 -1.8
Or see this region's nucleotide sequence