Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2618

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2615 and Shewana3_2616 are separated by 22 nucleotidesShewana3_2616 and Shewana3_2617 are separated by 70 nucleotidesShewana3_2617 and Shewana3_2618 are separated by 73 nucleotidesShewana3_2618 and Shewana3_2619 are separated by 180 nucleotides Shewana3_2615: Shewana3_2615 - hypothetical protein (RefSeq), at 3,121,980 to 3,122,366 _2615 Shewana3_2616: Shewana3_2616 - RNA-binding S4 domain-containing protein (RefSeq), at 3,122,389 to 3,122,619 _2616 Shewana3_2617: Shewana3_2617 - GCN5-related N-acetyltransferase (RefSeq), at 3,122,690 to 3,123,226 _2617 Shewana3_2618: Shewana3_2618 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,123,300 to 3,123,578 _2618 Shewana3_2619: Shewana3_2619 - hypothetical protein (RefSeq), at 3,123,759 to 3,125,594 _2619 Position (kb) 3123 3124Strain fitness (log2 ratio) -2 -1 0 1 2at 3122.301 kb on - strand, within Shewana3_2615at 3122.550 kb on - strand, within Shewana3_2616at 3122.833 kb on - strand, within Shewana3_2617at 3122.873 kb on + strand, within Shewana3_2617at 3122.890 kb on + strand, within Shewana3_2617at 3122.920 kb on - strand, within Shewana3_2617at 3122.921 kb on - strand, within Shewana3_2617at 3122.921 kb on - strand, within Shewana3_2617at 3123.067 kb on - strand, within Shewana3_2617at 3123.069 kb on + strand, within Shewana3_2617at 3123.079 kb on + strand, within Shewana3_2617at 3123.151 kb on - strand, within Shewana3_2617at 3123.173 kb on + strandat 3123.196 kb on + strandat 3123.204 kb on - strandat 3123.343 kb on + strand, within Shewana3_2618at 3123.507 kb on + strand, within Shewana3_2618at 3123.523 kb on + strand, within Shewana3_2618at 3123.531 kb on - strand, within Shewana3_2618at 3123.536 kb on - strand, within Shewana3_2618at 3123.697 kb on + strandat 3123.907 kb on - strandat 3124.225 kb on + strand, within Shewana3_2619at 3124.454 kb on + strand, within Shewana3_2619at 3124.499 kb on + strand, within Shewana3_2619

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
3,122,301 - Shewana3_2615 0.83 -0.3
3,122,550 - Shewana3_2616 0.70 -0.9
3,122,833 - Shewana3_2617 0.27 -1.8
3,122,873 + Shewana3_2617 0.34 -0.4
3,122,890 + Shewana3_2617 0.37 -0.9
3,122,920 - Shewana3_2617 0.43 -1.2
3,122,921 - Shewana3_2617 0.43 +2.4
3,122,921 - Shewana3_2617 0.43 +0.1
3,123,067 - Shewana3_2617 0.70 +0.9
3,123,069 + Shewana3_2617 0.71 +0.6
3,123,079 + Shewana3_2617 0.72 +0.4
3,123,151 - Shewana3_2617 0.86 -0.4
3,123,173 + +0.1
3,123,196 + +0.9
3,123,204 - -0.8
3,123,343 + Shewana3_2618 0.15 +1.2
3,123,507 + Shewana3_2618 0.74 +1.2
3,123,523 + Shewana3_2618 0.80 -0.5
3,123,531 - Shewana3_2618 0.83 +1.3
3,123,536 - Shewana3_2618 0.85 +0.7
3,123,697 + +0.7
3,123,907 - +0.0
3,124,225 + Shewana3_2619 0.25 -1.1
3,124,454 + Shewana3_2619 0.38 -1.0
3,124,499 + Shewana3_2619 0.40 -1.8

Or see this region's nucleotide sequence