Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2593 and Shewana3_2594 overlap by 4 nucleotides Shewana3_2594 and Shewana3_2595 are separated by 195 nucleotides Shewana3_2595 and Shewana3_2596 are separated by 138 nucleotides Shewana3_2596 and Shewana3_2597 are separated by 131 nucleotides
Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154
_2593
Shewana3_2594: Shewana3_2594 - putative two-component response-regulatory protein YehT (RefSeq), at 3,098,151 to 3,098,861
_2594
Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511
_2595
Shewana3_2596: Shewana3_2596 - hypothetical protein (RefSeq), at 3,100,650 to 3,101,018
_2596
Shewana3_2597: Shewana3_2597 - L-sorbosone dehydrogenase (SNDH) (RefSeq), at 3,101,150 to 3,102,292
_2597
Position (kb)
3099
3100
3101 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3098.072 kb on + strand at 3098.403 kb on - strand, within Shewana3_2594 at 3099.074 kb on - strand at 3099.376 kb on - strand, within Shewana3_2595 at 3099.388 kb on + strand, within Shewana3_2595 at 3099.487 kb on - strand, within Shewana3_2595 at 3099.520 kb on + strand, within Shewana3_2595 at 3099.648 kb on + strand, within Shewana3_2595 at 3099.687 kb on - strand, within Shewana3_2595 at 3099.746 kb on + strand, within Shewana3_2595 at 3099.759 kb on - strand, within Shewana3_2595 at 3099.950 kb on - strand, within Shewana3_2595 at 3100.041 kb on - strand, within Shewana3_2595 at 3100.253 kb on + strand, within Shewana3_2595 at 3100.385 kb on - strand at 3100.434 kb on + strand at 3100.629 kb on + strand at 3100.637 kb on - strand at 3101.491 kb on - strand, within Shewana3_2597
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,098,072 + +0.5 3,098,403 - Shewana3_2594 0.35 -3.1 3,099,074 - +0.3 3,099,376 - Shewana3_2595 0.22 -0.1 3,099,388 + Shewana3_2595 0.23 +0.6 3,099,487 - Shewana3_2595 0.30 +0.1 3,099,520 + Shewana3_2595 0.32 +1.4 3,099,648 + Shewana3_2595 0.41 -2.3 3,099,687 - Shewana3_2595 0.43 +1.0 3,099,746 + Shewana3_2595 0.47 +0.9 3,099,759 - Shewana3_2595 0.48 +1.2 3,099,950 - Shewana3_2595 0.61 +0.4 3,100,041 - Shewana3_2595 0.68 -0.9 3,100,253 + Shewana3_2595 0.82 -0.9 3,100,385 - -0.7 3,100,434 + -1.5 3,100,629 + -0.3 3,100,637 - +1.2 3,101,491 - Shewana3_2597 0.30 +0.6
Or see this region's nucleotide sequence