Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2594

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2593 and Shewana3_2594 overlap by 4 nucleotidesShewana3_2594 and Shewana3_2595 are separated by 195 nucleotides Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154 _2593 Shewana3_2594: Shewana3_2594 - putative two-component response-regulatory protein YehT (RefSeq), at 3,098,151 to 3,098,861 _2594 Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511 _2595 Position (kb) 3098 3099Strain fitness (log2 ratio) -3 -2 -1 0 1at 3097.724 kb on - strand, within Shewana3_2593at 3098.072 kb on + strandat 3098.403 kb on - strand, within Shewana3_2594at 3099.074 kb on - strandat 3099.376 kb on - strand, within Shewana3_2595at 3099.388 kb on + strand, within Shewana3_2595at 3099.487 kb on - strand, within Shewana3_2595at 3099.520 kb on + strand, within Shewana3_2595at 3099.648 kb on + strand, within Shewana3_2595at 3099.687 kb on - strand, within Shewana3_2595at 3099.746 kb on + strand, within Shewana3_2595at 3099.759 kb on - strand, within Shewana3_2595

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,097,724 - Shewana3_2593 0.74 -2.9
3,098,072 + +0.5
3,098,403 - Shewana3_2594 0.35 -3.1
3,099,074 - +0.3
3,099,376 - Shewana3_2595 0.22 -0.1
3,099,388 + Shewana3_2595 0.23 +0.6
3,099,487 - Shewana3_2595 0.30 +0.1
3,099,520 + Shewana3_2595 0.32 +1.4
3,099,648 + Shewana3_2595 0.41 -2.3
3,099,687 - Shewana3_2595 0.43 +1.0
3,099,746 + Shewana3_2595 0.47 +0.9
3,099,759 - Shewana3_2595 0.48 +1.2

Or see this region's nucleotide sequence