Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2589 and Shewana3_2590 are separated by 77 nucleotides Shewana3_2590 and Shewana3_2591 overlap by 14 nucleotides Shewana3_2591 and Shewana3_2592 are separated by 374 nucleotides Shewana3_2592 and Shewana3_2593 are separated by 137 nucleotides
Shewana3_2589: Shewana3_2589 - type IV pilus assembly PilZ (RefSeq), at 3,094,425 to 3,094,727
_2589
Shewana3_2590: Shewana3_2590 - hypothetical protein (RefSeq), at 3,094,805 to 3,095,473
_2590
Shewana3_2591: Shewana3_2591 - RepA domain-containing protein (RefSeq), at 3,095,460 to 3,095,801
_2591
Shewana3_2592: Shewana3_2592 - hypothetical protein (RefSeq), at 3,096,176 to 3,096,334
_2592
Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154
_2593
Position (kb)
3095
3096 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3094.497 kb on + strand, within Shewana3_2589 at 3094.505 kb on - strand, within Shewana3_2589 at 3094.530 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.686 kb on - strand, within Shewana3_2589 at 3094.760 kb on + strand at 3094.760 kb on + strand at 3095.074 kb on + strand, within Shewana3_2590 at 3095.077 kb on - strand, within Shewana3_2590 at 3095.127 kb on + strand, within Shewana3_2590 at 3095.203 kb on + strand, within Shewana3_2590 at 3095.220 kb on + strand, within Shewana3_2590 at 3095.220 kb on + strand, within Shewana3_2590 at 3095.228 kb on - strand, within Shewana3_2590 at 3095.356 kb on + strand, within Shewana3_2590 at 3095.803 kb on - strand at 3095.879 kb on + strand at 3096.172 kb on - strand at 3096.288 kb on + strand, within Shewana3_2592 at 3096.291 kb on + strand, within Shewana3_2592 at 3096.489 kb on - strand at 3096.556 kb on - strand at 3096.756 kb on - strand, within Shewana3_2593
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,094,497 + Shewana3_2589 0.24 -0.4 3,094,505 - Shewana3_2589 0.26 +0.2 3,094,530 - Shewana3_2589 0.35 +0.6 3,094,686 - Shewana3_2589 0.86 +3.5 3,094,686 - Shewana3_2589 0.86 -0.5 3,094,760 + +0.1 3,094,760 + +1.6 3,095,074 + Shewana3_2590 0.40 -0.6 3,095,077 - Shewana3_2590 0.41 +1.0 3,095,127 + Shewana3_2590 0.48 -0.9 3,095,203 + Shewana3_2590 0.59 -1.4 3,095,220 + Shewana3_2590 0.62 -0.7 3,095,220 + Shewana3_2590 0.62 +0.4 3,095,228 - Shewana3_2590 0.63 -0.7 3,095,356 + Shewana3_2590 0.82 -1.8 3,095,803 - -1.7 3,095,879 + -0.3 3,096,172 - +1.6 3,096,288 + Shewana3_2592 0.70 -0.7 3,096,291 + Shewana3_2592 0.72 -1.5 3,096,489 - +0.1 3,096,556 - -1.1 3,096,756 - Shewana3_2593 0.17 -1.9
Or see this region's nucleotide sequence