Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2539 and Shewana3_2540 are separated by 142 nucleotides Shewana3_2540 and Shewana3_2541 are separated by 74 nucleotides Shewana3_2541 and Shewana3_2542 are separated by 370 nucleotides
Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880
_2539
Shewana3_2540: Shewana3_2540 - ribonuclease T (RefSeq), at 3,037,023 to 3,037,691
_2540
Shewana3_2541: Shewana3_2541 - alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen (RefSeq), at 3,037,766 to 3,038,371
_2541
Shewana3_2542: Shewana3_2542 - Na+/H+ antiporter NhaC (RefSeq), at 3,038,742 to 3,040,061
_2542
Position (kb)
3037
3038
3039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3036.805 kb on + strand at 3037.106 kb on + strand, within Shewana3_2540 at 3037.206 kb on + strand, within Shewana3_2540 at 3037.572 kb on + strand, within Shewana3_2540 at 3037.728 kb on + strand at 3037.820 kb on + strand at 3037.984 kb on - strand, within Shewana3_2541 at 3038.166 kb on - strand, within Shewana3_2541 at 3038.171 kb on - strand, within Shewana3_2541 at 3038.192 kb on - strand, within Shewana3_2541 at 3038.305 kb on - strand, within Shewana3_2541 at 3038.315 kb on + strand at 3038.323 kb on - strand at 3038.576 kb on - strand at 3038.765 kb on + strand at 3038.816 kb on + strand at 3038.918 kb on + strand, within Shewana3_2542 at 3039.046 kb on + strand, within Shewana3_2542 at 3039.158 kb on + strand, within Shewana3_2542 at 3039.199 kb on + strand, within Shewana3_2542
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,036,805 + +3.8 3,037,106 + Shewana3_2540 0.12 +0.6 3,037,206 + Shewana3_2540 0.27 -0.5 3,037,572 + Shewana3_2540 0.82 +3.8 3,037,728 + +1.1 3,037,820 + -2.9 3,037,984 - Shewana3_2541 0.36 -0.4 3,038,166 - Shewana3_2541 0.66 +0.1 3,038,171 - Shewana3_2541 0.67 -0.0 3,038,192 - Shewana3_2541 0.70 -0.2 3,038,305 - Shewana3_2541 0.89 +0.3 3,038,315 + +0.7 3,038,323 - -1.2 3,038,576 - +0.6 3,038,765 + +0.5 3,038,816 + -0.8 3,038,918 + Shewana3_2542 0.13 -1.2 3,039,046 + Shewana3_2542 0.23 +0.5 3,039,158 + Shewana3_2542 0.32 +1.0 3,039,199 + Shewana3_2542 0.35 +0.5
Or see this region's nucleotide sequence