Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2538

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2537 and Shewana3_2538 are separated by 116 nucleotidesShewana3_2538 and Shewana3_2539 are separated by 116 nucleotides Shewana3_2537: Shewana3_2537 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,034,462 to 3,035,361 _2537 Shewana3_2538: Shewana3_2538 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 3,035,478 to 3,035,891 _2538 Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880 _2539 Position (kb) 3035 3036Strain fitness (log2 ratio) -1 0 1 2 3 4at 3034.767 kb on - strand, within Shewana3_2537at 3035.313 kb on + strandat 3035.970 kb on + strandat 3036.044 kb on + strandat 3036.103 kb on + strand, within Shewana3_2539at 3036.125 kb on - strand, within Shewana3_2539at 3036.541 kb on - strand, within Shewana3_2539at 3036.541 kb on - strand, within Shewana3_2539at 3036.613 kb on - strand, within Shewana3_2539at 3036.613 kb on - strand, within Shewana3_2539at 3036.631 kb on - strand, within Shewana3_2539at 3036.645 kb on - strand, within Shewana3_2539at 3036.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,034,767 - Shewana3_2537 0.34 +1.4
3,035,313 + -0.3
3,035,970 + -0.5
3,036,044 + +3.5
3,036,103 + Shewana3_2539 0.11 +4.2
3,036,125 - Shewana3_2539 0.13 +2.7
3,036,541 - Shewana3_2539 0.61 +2.7
3,036,541 - Shewana3_2539 0.61 +3.7
3,036,613 - Shewana3_2539 0.69 +3.1
3,036,613 - Shewana3_2539 0.69 +4.7
3,036,631 - Shewana3_2539 0.71 +4.2
3,036,645 - Shewana3_2539 0.73 +2.1
3,036,805 + +3.8

Or see this region's nucleotide sequence