Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2512

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2510 and Shewana3_2511 are separated by 69 nucleotidesShewana3_2511 and Shewana3_2512 are separated by 324 nucleotidesShewana3_2512 and Shewana3_2513 are separated by 287 nucleotides Shewana3_2510: Shewana3_2510 - cytochrome B561 (RefSeq), at 3,000,734 to 3,001,480 _2510 Shewana3_2511: Shewana3_2511 - cytochrome c3 (RefSeq), at 3,001,550 to 3,001,900 _2511 Shewana3_2512: Shewana3_2512 - heat shock protein HtpX (RefSeq), at 3,002,225 to 3,003,088 _2512 Shewana3_2513: Shewana3_2513 - peptidase E (RefSeq), at 3,003,376 to 3,004,086 _2513 Position (kb) 3002 3003 3004Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3001.251 kb on + strand, within Shewana3_2510at 3001.259 kb on - strand, within Shewana3_2510at 3001.284 kb on - strand, within Shewana3_2510at 3001.329 kb on + strand, within Shewana3_2510at 3001.465 kb on + strandat 3001.648 kb on - strand, within Shewana3_2511at 3001.833 kb on - strand, within Shewana3_2511at 3001.855 kb on + strand, within Shewana3_2511at 3001.910 kb on + strandat 3001.952 kb on - strandat 3002.156 kb on - strandat 3002.190 kb on + strandat 3002.537 kb on - strand, within Shewana3_2512at 3002.876 kb on - strand, within Shewana3_2512at 3002.881 kb on - strand, within Shewana3_2512at 3002.889 kb on - strand, within Shewana3_2512at 3003.166 kb on + strandat 3003.208 kb on + strandat 3003.237 kb on + strandat 3003.391 kb on + strandat 3003.394 kb on + strandat 3003.402 kb on - strandat 3003.404 kb on + strandat 3003.404 kb on + strandat 3003.404 kb on + strandat 3003.416 kb on + strandat 3003.431 kb on - strandat 3003.960 kb on - strand, within Shewana3_2513

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,001,251 + Shewana3_2510 0.69 -0.7
3,001,259 - Shewana3_2510 0.70 -0.8
3,001,284 - Shewana3_2510 0.74 -1.1
3,001,329 + Shewana3_2510 0.80 -0.5
3,001,465 + -0.5
3,001,648 - Shewana3_2511 0.28 +0.3
3,001,833 - Shewana3_2511 0.81 -0.3
3,001,855 + Shewana3_2511 0.87 +0.7
3,001,910 + +1.1
3,001,952 - +0.2
3,002,156 - +1.0
3,002,190 + -0.1
3,002,537 - Shewana3_2512 0.36 -0.2
3,002,876 - Shewana3_2512 0.75 -0.2
3,002,881 - Shewana3_2512 0.76 -1.7
3,002,889 - Shewana3_2512 0.77 -0.6
3,003,166 + -1.1
3,003,208 + +0.4
3,003,237 + -0.1
3,003,391 + +0.1
3,003,394 + -1.1
3,003,402 - +3.2
3,003,404 + +0.2
3,003,404 + +0.5
3,003,404 + -1.4
3,003,416 + -1.1
3,003,431 - -2.1
3,003,960 - Shewana3_2513 0.82 -1.1

Or see this region's nucleotide sequence