Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2510 and Shewana3_2511 are separated by 69 nucleotides Shewana3_2511 and Shewana3_2512 are separated by 324 nucleotides Shewana3_2512 and Shewana3_2513 are separated by 287 nucleotides
Shewana3_2510: Shewana3_2510 - cytochrome B561 (RefSeq), at 3,000,734 to 3,001,480
_2510
Shewana3_2511: Shewana3_2511 - cytochrome c3 (RefSeq), at 3,001,550 to 3,001,900
_2511
Shewana3_2512: Shewana3_2512 - heat shock protein HtpX (RefSeq), at 3,002,225 to 3,003,088
_2512
Shewana3_2513: Shewana3_2513 - peptidase E (RefSeq), at 3,003,376 to 3,004,086
_2513
Position (kb)
3002
3003
3004 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3001.251 kb on + strand, within Shewana3_2510 at 3001.259 kb on - strand, within Shewana3_2510 at 3001.284 kb on - strand, within Shewana3_2510 at 3001.329 kb on + strand, within Shewana3_2510 at 3001.465 kb on + strand at 3001.648 kb on - strand, within Shewana3_2511 at 3001.833 kb on - strand, within Shewana3_2511 at 3001.855 kb on + strand, within Shewana3_2511 at 3001.910 kb on + strand at 3001.952 kb on - strand at 3002.156 kb on - strand at 3002.190 kb on + strand at 3002.537 kb on - strand, within Shewana3_2512 at 3002.876 kb on - strand, within Shewana3_2512 at 3002.881 kb on - strand, within Shewana3_2512 at 3002.889 kb on - strand, within Shewana3_2512 at 3003.166 kb on + strand at 3003.208 kb on + strand at 3003.237 kb on + strand at 3003.391 kb on + strand at 3003.394 kb on + strand at 3003.402 kb on - strand at 3003.404 kb on + strand at 3003.404 kb on + strand at 3003.404 kb on + strand at 3003.416 kb on + strand at 3003.431 kb on - strand at 3003.960 kb on - strand, within Shewana3_2513
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,001,251 + Shewana3_2510 0.69 -0.7 3,001,259 - Shewana3_2510 0.70 -0.8 3,001,284 - Shewana3_2510 0.74 -1.1 3,001,329 + Shewana3_2510 0.80 -0.5 3,001,465 + -0.5 3,001,648 - Shewana3_2511 0.28 +0.3 3,001,833 - Shewana3_2511 0.81 -0.3 3,001,855 + Shewana3_2511 0.87 +0.7 3,001,910 + +1.1 3,001,952 - +0.2 3,002,156 - +1.0 3,002,190 + -0.1 3,002,537 - Shewana3_2512 0.36 -0.2 3,002,876 - Shewana3_2512 0.75 -0.2 3,002,881 - Shewana3_2512 0.76 -1.7 3,002,889 - Shewana3_2512 0.77 -0.6 3,003,166 + -1.1 3,003,208 + +0.4 3,003,237 + -0.1 3,003,391 + +0.1 3,003,394 + -1.1 3,003,402 - +3.2 3,003,404 + +0.2 3,003,404 + +0.5 3,003,404 + -1.4 3,003,416 + -1.1 3,003,431 - -2.1 3,003,960 - Shewana3_2513 0.82 -1.1
Or see this region's nucleotide sequence