Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2414

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2413 and Shewana3_2414 are separated by 124 nucleotidesShewana3_2414 and Shewana3_2415 are separated by 112 nucleotidesShewana3_2415 and Shewana3_2416 are separated by 9 nucleotides Shewana3_2413: Shewana3_2413 - ATPase domain-containing protein (RefSeq), at 2,892,852 to 2,895,011 _2413 Shewana3_2414: Shewana3_2414 - cystathionine beta-lyase (RefSeq), at 2,895,136 to 2,896,335 _2414 Shewana3_2415: Shewana3_2415 - CreA family protein (RefSeq), at 2,896,448 to 2,896,963 _2415 Shewana3_2416: Shewana3_2416 - putative chaperone (RefSeq), at 2,896,973 to 2,898,427 _2416 Position (kb) 2895 2896 2897Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2894.194 kb on + strand, within Shewana3_2413at 2894.336 kb on - strand, within Shewana3_2413at 2894.441 kb on - strand, within Shewana3_2413at 2894.572 kb on - strand, within Shewana3_2413at 2894.588 kb on - strand, within Shewana3_2413at 2894.603 kb on - strand, within Shewana3_2413at 2894.620 kb on - strand, within Shewana3_2413at 2894.625 kb on - strand, within Shewana3_2413at 2894.741 kb on - strand, within Shewana3_2413at 2894.902 kb on - strandat 2895.455 kb on - strand, within Shewana3_2414at 2895.494 kb on + strand, within Shewana3_2414at 2895.635 kb on + strand, within Shewana3_2414at 2895.640 kb on + strand, within Shewana3_2414at 2895.643 kb on - strand, within Shewana3_2414at 2895.905 kb on + strand, within Shewana3_2414at 2895.905 kb on + strand, within Shewana3_2414at 2895.905 kb on + strand, within Shewana3_2414at 2895.905 kb on + strand, within Shewana3_2414at 2895.913 kb on - strand, within Shewana3_2414at 2895.935 kb on + strand, within Shewana3_2414at 2896.302 kb on + strandat 2896.367 kb on + strandat 2896.489 kb on + strandat 2896.996 kb on - strandat 2897.086 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,894,194 + Shewana3_2413 0.62 +0.6
2,894,336 - Shewana3_2413 0.69 -0.1
2,894,441 - Shewana3_2413 0.74 +0.6
2,894,572 - Shewana3_2413 0.80 -0.1
2,894,588 - Shewana3_2413 0.80 -0.3
2,894,603 - Shewana3_2413 0.81 -0.3
2,894,620 - Shewana3_2413 0.82 -0.7
2,894,625 - Shewana3_2413 0.82 +0.8
2,894,741 - Shewana3_2413 0.87 -0.2
2,894,902 - +1.4
2,895,455 - Shewana3_2414 0.27 -4.8
2,895,494 + Shewana3_2414 0.30 -1.1
2,895,635 + Shewana3_2414 0.42 -5.1
2,895,640 + Shewana3_2414 0.42 -3.7
2,895,643 - Shewana3_2414 0.42 -2.5
2,895,905 + Shewana3_2414 0.64 -6.1
2,895,905 + Shewana3_2414 0.64 -2.6
2,895,905 + Shewana3_2414 0.64 -2.4
2,895,905 + Shewana3_2414 0.64 -2.3
2,895,913 - Shewana3_2414 0.65 -3.0
2,895,935 + Shewana3_2414 0.67 -5.1
2,896,302 + +0.0
2,896,367 + -1.5
2,896,489 + +0.1
2,896,996 - +0.1
2,897,086 + -0.1

Or see this region's nucleotide sequence