Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2375 and Shewana3_2376 are separated by 311 nucleotides Shewana3_2376 and Shewana3_2377 are separated by 45 nucleotides Shewana3_2377 and Shewana3_2378 are separated by 190 nucleotides
Shewana3_2375: Shewana3_2375 - putative lipoprotein (RefSeq), at 2,853,786 to 2,855,576
_2375
Shewana3_2376: Shewana3_2376 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,855,888 to 2,857,363
_2376
Shewana3_2377: Shewana3_2377 - peptidyl-prolyl cis-trans isomerase B (RefSeq), at 2,857,409 to 2,857,909
_2377
Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713
_2378
Position (kb)
2855
2856
2857
2858 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2855.006 kb on + strand, within Shewana3_2375 at 2855.006 kb on + strand, within Shewana3_2375 at 2855.014 kb on - strand, within Shewana3_2375 at 2855.026 kb on + strand, within Shewana3_2375 at 2855.026 kb on + strand, within Shewana3_2375 at 2855.373 kb on + strand, within Shewana3_2375 at 2855.704 kb on + strand at 2855.847 kb on + strand at 2855.847 kb on + strand at 2855.855 kb on - strand at 2855.952 kb on - strand at 2855.979 kb on - strand at 2856.056 kb on - strand, within Shewana3_2376 at 2856.285 kb on - strand, within Shewana3_2376 at 2856.369 kb on + strand, within Shewana3_2376 at 2856.720 kb on + strand, within Shewana3_2376 at 2856.818 kb on + strand, within Shewana3_2376 at 2856.949 kb on + strand, within Shewana3_2376 at 2857.151 kb on - strand, within Shewana3_2376 at 2857.274 kb on - strand at 2857.544 kb on + strand, within Shewana3_2377
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,855,006 + Shewana3_2375 0.68 +2.5 2,855,006 + Shewana3_2375 0.68 -2.7 2,855,014 - Shewana3_2375 0.69 -0.8 2,855,026 + Shewana3_2375 0.69 +1.0 2,855,026 + Shewana3_2375 0.69 +0.7 2,855,373 + Shewana3_2375 0.89 -2.6 2,855,704 + -1.1 2,855,847 + +0.3 2,855,847 + +0.3 2,855,855 - -0.2 2,855,952 - +0.1 2,855,979 - -0.1 2,856,056 - Shewana3_2376 0.11 -0.9 2,856,285 - Shewana3_2376 0.27 -1.8 2,856,369 + Shewana3_2376 0.33 -0.4 2,856,720 + Shewana3_2376 0.56 -0.1 2,856,818 + Shewana3_2376 0.63 -0.6 2,856,949 + Shewana3_2376 0.72 +1.5 2,857,151 - Shewana3_2376 0.86 -0.1 2,857,274 - -0.7 2,857,544 + Shewana3_2377 0.27 +1.3
Or see this region's nucleotide sequence