Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2268

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2267 and Shewana3_2268 are separated by 481 nucleotidesShewana3_2268 and Shewana3_2269 are separated by 468 nucleotides Shewana3_2267: Shewana3_2267 - alkaline phosphatase (RefSeq), at 2,729,003 to 2,730,877 _2267 Shewana3_2268: Shewana3_2268 - Bcr/CflA subfamily drug resistance transporter (RefSeq), at 2,731,359 to 2,732,582 _2268 Shewana3_2269: Shewana3_2269 - acetolactate synthase 3 catalytic subunit (RefSeq), at 2,733,051 to 2,734,769 _2269 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2730.592 kb on + strand, within Shewana3_2267at 2730.593 kb on - strand, within Shewana3_2267at 2730.597 kb on + strand, within Shewana3_2267at 2730.605 kb on - strand, within Shewana3_2267at 2730.612 kb on + strand, within Shewana3_2267at 2730.733 kb on - strandat 2731.020 kb on - strandat 2731.664 kb on + strand, within Shewana3_2268at 2731.667 kb on - strand, within Shewana3_2268at 2731.787 kb on + strand, within Shewana3_2268at 2732.004 kb on + strand, within Shewana3_2268at 2732.404 kb on + strand, within Shewana3_2268at 2733.138 kb on + strandat 2733.138 kb on + strandat 2733.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,730,592 + Shewana3_2267 0.85 -1.0
2,730,593 - Shewana3_2267 0.85 -1.4
2,730,597 + Shewana3_2267 0.85 -1.2
2,730,605 - Shewana3_2267 0.85 -0.3
2,730,612 + Shewana3_2267 0.86 -0.3
2,730,733 - +0.9
2,731,020 - +4.2
2,731,664 + Shewana3_2268 0.25 +0.4
2,731,667 - Shewana3_2268 0.25 +0.7
2,731,787 + Shewana3_2268 0.35 +0.1
2,732,004 + Shewana3_2268 0.53 -0.8
2,732,404 + Shewana3_2268 0.85 +0.4
2,733,138 + -4.1
2,733,138 + -3.3
2,733,146 - -2.3

Or see this region's nucleotide sequence