Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2254 and Shewana3_2255 are separated by 160 nucleotides Shewana3_2255 and Shewana3_2256 are separated by 23 nucleotides Shewana3_2256 and Shewana3_2257 are separated by 32 nucleotides
Shewana3_2254: Shewana3_2254 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,716,134 to 2,717,771
_2254
Shewana3_2255: Shewana3_2255 - hypothetical protein (RefSeq), at 2,717,932 to 2,718,327
_2255
Shewana3_2256: Shewana3_2256 - HPr family phosphocarrier protein (RefSeq), at 2,718,351 to 2,718,608
_2256
Shewana3_2257: Shewana3_2257 - phosphoenolpyruvate--protein phosphotransferase (RefSeq), at 2,718,641 to 2,720,344
_2257
Position (kb)
2718
2719 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2717.472 kb on - strand, within Shewana3_2254 at 2717.935 kb on + strand at 2717.935 kb on + strand at 2718.119 kb on + strand, within Shewana3_2255 at 2718.338 kb on + strand at 2718.513 kb on - strand, within Shewana3_2256 at 2718.513 kb on - strand, within Shewana3_2256 at 2718.566 kb on - strand, within Shewana3_2256 at 2718.704 kb on - strand at 2718.704 kb on - strand at 2719.073 kb on + strand, within Shewana3_2257 at 2719.476 kb on + strand, within Shewana3_2257 at 2719.546 kb on + strand, within Shewana3_2257 at 2719.551 kb on + strand, within Shewana3_2257 at 2719.554 kb on - strand, within Shewana3_2257
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,717,472 - Shewana3_2254 0.82 -0.7 2,717,935 + -1.1 2,717,935 + +0.4 2,718,119 + Shewana3_2255 0.47 -0.7 2,718,338 + -3.2 2,718,513 - Shewana3_2256 0.63 -1.7 2,718,513 - Shewana3_2256 0.63 -1.1 2,718,566 - Shewana3_2256 0.83 -2.9 2,718,704 - -2.2 2,718,704 - +0.7 2,719,073 + Shewana3_2257 0.25 -1.4 2,719,476 + Shewana3_2257 0.49 -1.5 2,719,546 + Shewana3_2257 0.53 -1.4 2,719,551 + Shewana3_2257 0.53 -2.2 2,719,554 - Shewana3_2257 0.54 -1.6
Or see this region's nucleotide sequence