Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2256

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2254 and Shewana3_2255 are separated by 160 nucleotidesShewana3_2255 and Shewana3_2256 are separated by 23 nucleotidesShewana3_2256 and Shewana3_2257 are separated by 32 nucleotides Shewana3_2254: Shewana3_2254 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,716,134 to 2,717,771 _2254 Shewana3_2255: Shewana3_2255 - hypothetical protein (RefSeq), at 2,717,932 to 2,718,327 _2255 Shewana3_2256: Shewana3_2256 - HPr family phosphocarrier protein (RefSeq), at 2,718,351 to 2,718,608 _2256 Shewana3_2257: Shewana3_2257 - phosphoenolpyruvate--protein phosphotransferase (RefSeq), at 2,718,641 to 2,720,344 _2257 Position (kb) 2718 2719Strain fitness (log2 ratio) -3 -2 -1 0 1at 2717.472 kb on - strand, within Shewana3_2254at 2717.935 kb on + strandat 2717.935 kb on + strandat 2718.119 kb on + strand, within Shewana3_2255at 2718.338 kb on + strandat 2718.513 kb on - strand, within Shewana3_2256at 2718.513 kb on - strand, within Shewana3_2256at 2718.566 kb on - strand, within Shewana3_2256at 2718.704 kb on - strandat 2718.704 kb on - strandat 2719.073 kb on + strand, within Shewana3_2257at 2719.476 kb on + strand, within Shewana3_2257at 2719.546 kb on + strand, within Shewana3_2257at 2719.551 kb on + strand, within Shewana3_2257at 2719.554 kb on - strand, within Shewana3_2257

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,717,472 - Shewana3_2254 0.82 -0.7
2,717,935 + -1.1
2,717,935 + +0.4
2,718,119 + Shewana3_2255 0.47 -0.7
2,718,338 + -3.2
2,718,513 - Shewana3_2256 0.63 -1.7
2,718,513 - Shewana3_2256 0.63 -1.1
2,718,566 - Shewana3_2256 0.83 -2.9
2,718,704 - -2.2
2,718,704 - +0.7
2,719,073 + Shewana3_2257 0.25 -1.4
2,719,476 + Shewana3_2257 0.49 -1.5
2,719,546 + Shewana3_2257 0.53 -1.4
2,719,551 + Shewana3_2257 0.53 -2.2
2,719,554 - Shewana3_2257 0.54 -1.6

Or see this region's nucleotide sequence