Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2209

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2208 and Shewana3_2209 are separated by 232 nucleotidesShewana3_2209 and Shewana3_2210 are separated by 157 nucleotidesShewana3_2210 and Shewana3_2211 are separated by 98 nucleotides Shewana3_2208: Shewana3_2208 - phytase (RefSeq), at 2,652,076 to 2,654,037 _2208 Shewana3_2209: Shewana3_2209 - ABC transporter related (RefSeq), at 2,654,270 to 2,655,862 _2209 Shewana3_2210: Shewana3_2210 - activator of Hsp90 ATPase family protein (RefSeq), at 2,656,020 to 2,656,469 _2210 Shewana3_2211: Shewana3_2211 - NERD domain-containing protein (RefSeq), at 2,656,568 to 2,657,629 _2211 Position (kb) 2654 2655 2656Strain fitness (log2 ratio) -2 -1 0 1 2at 2653.295 kb on + strand, within Shewana3_2208at 2653.303 kb on - strand, within Shewana3_2208at 2653.303 kb on - strand, within Shewana3_2208at 2653.459 kb on + strand, within Shewana3_2208at 2653.459 kb on + strand, within Shewana3_2208at 2653.459 kb on + strand, within Shewana3_2208at 2653.534 kb on + strand, within Shewana3_2208at 2653.617 kb on + strand, within Shewana3_2208at 2653.617 kb on + strand, within Shewana3_2208at 2653.827 kb on + strand, within Shewana3_2208at 2654.057 kb on - strandat 2654.782 kb on - strand, within Shewana3_2209at 2655.003 kb on - strand, within Shewana3_2209at 2655.043 kb on - strand, within Shewana3_2209at 2655.429 kb on + strand, within Shewana3_2209at 2656.238 kb on - strand, within Shewana3_2210at 2656.246 kb on + strand, within Shewana3_2210at 2656.254 kb on - strand, within Shewana3_2210at 2656.256 kb on + strand, within Shewana3_2210at 2656.256 kb on + strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.264 kb on - strand, within Shewana3_2210at 2656.297 kb on - strand, within Shewana3_2210at 2656.303 kb on - strand, within Shewana3_2210at 2656.399 kb on + strand, within Shewana3_2210at 2656.479 kb on - strandat 2656.842 kb on - strand, within Shewana3_2211

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,653,295 + Shewana3_2208 0.62 +0.9
2,653,303 - Shewana3_2208 0.63 -1.8
2,653,303 - Shewana3_2208 0.63 -0.4
2,653,459 + Shewana3_2208 0.70 -0.0
2,653,459 + Shewana3_2208 0.70 -0.2
2,653,459 + Shewana3_2208 0.70 +0.3
2,653,534 + Shewana3_2208 0.74 -2.2
2,653,617 + Shewana3_2208 0.79 -0.4
2,653,617 + Shewana3_2208 0.79 +0.0
2,653,827 + Shewana3_2208 0.89 -0.3
2,654,057 - +0.3
2,654,782 - Shewana3_2209 0.32 +1.6
2,655,003 - Shewana3_2209 0.46 +0.5
2,655,043 - Shewana3_2209 0.49 +2.2
2,655,429 + Shewana3_2209 0.73 -0.2
2,656,238 - Shewana3_2210 0.48 -1.5
2,656,246 + Shewana3_2210 0.50 -0.9
2,656,254 - Shewana3_2210 0.52 -0.1
2,656,256 + Shewana3_2210 0.52 -0.8
2,656,256 + Shewana3_2210 0.52 -0.1
2,656,264 - Shewana3_2210 0.54 -0.9
2,656,264 - Shewana3_2210 0.54 +0.8
2,656,264 - Shewana3_2210 0.54 -0.3
2,656,264 - Shewana3_2210 0.54 -0.6
2,656,297 - Shewana3_2210 0.62 -0.8
2,656,303 - Shewana3_2210 0.63 -0.2
2,656,399 + Shewana3_2210 0.84 -0.5
2,656,479 - -0.5
2,656,842 - Shewana3_2211 0.26 -0.4

Or see this region's nucleotide sequence