Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0096

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0095 and Shewana3_R0096 are separated by 47 nucleotidesShewana3_R0096 and Shewana3_R0097 are separated by 31 nucleotidesShewana3_R0097 and Shewana3_R0098 are separated by 46 nucleotidesShewana3_R0098 and Shewana3_R0099 are separated by 46 nucleotidesShewana3_R0099 and Shewana3_2167 are separated by 208 nucleotides Shewana3_R0095: Shewana3_R0095 - tRNA-Asn (RefSeq), at 2,597,882 to 2,597,957 _R0095 Shewana3_R0096: Shewana3_R0096 - tRNA-Asn (RefSeq), at 2,598,005 to 2,598,080 _R0096 Shewana3_R0097: Shewana3_R0097 - tRNA-Asn (RefSeq), at 2,598,112 to 2,598,187 _R0097 Shewana3_R0098: Shewana3_R0098 - tRNA-Asn (RefSeq), at 2,598,234 to 2,598,309 _R0098 Shewana3_R0099: Shewana3_R0099 - tRNA-Asn (RefSeq), at 2,598,356 to 2,598,431 _R0099 Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544 _2167 Position (kb) 2598 2599Strain fitness (log2 ratio) -1 0 1 2at 2597.051 kb on - strandat 2597.051 kb on - strandat 2597.086 kb on + strandat 2597.310 kb on - strandat 2597.344 kb on - strandat 2597.359 kb on - strandat 2597.437 kb on + strandat 2598.296 kb on + strand, within Shewana3_R0098at 2598.472 kb on - strandat 2598.887 kb on - strand, within Shewana3_2167

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,597,051 - -0.1
2,597,051 - -1.1
2,597,086 + +0.4
2,597,310 - +0.8
2,597,344 - -0.6
2,597,359 - -0.3
2,597,437 + +0.1
2,598,296 + Shewana3_R0098 0.82 +1.3
2,598,472 - -0.7
2,598,887 - Shewana3_2167 0.13 +1.9

Or see this region's nucleotide sequence