Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0095 and Shewana3_R0096 are separated by 47 nucleotides Shewana3_R0096 and Shewana3_R0097 are separated by 31 nucleotides Shewana3_R0097 and Shewana3_R0098 are separated by 46 nucleotides Shewana3_R0098 and Shewana3_R0099 are separated by 46 nucleotides Shewana3_R0099 and Shewana3_2167 are separated by 208 nucleotides
Shewana3_R0095: Shewana3_R0095 - tRNA-Asn (RefSeq), at 2,597,882 to 2,597,957
_R0095
Shewana3_R0096: Shewana3_R0096 - tRNA-Asn (RefSeq), at 2,598,005 to 2,598,080
_R0096
Shewana3_R0097: Shewana3_R0097 - tRNA-Asn (RefSeq), at 2,598,112 to 2,598,187
_R0097
Shewana3_R0098: Shewana3_R0098 - tRNA-Asn (RefSeq), at 2,598,234 to 2,598,309
_R0098
Shewana3_R0099: Shewana3_R0099 - tRNA-Asn (RefSeq), at 2,598,356 to 2,598,431
_R0099
Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544
_2167
Position (kb)
2598
2599 Strain fitness (log2 ratio)
-1
0
1
2 at 2597.051 kb on - strand at 2597.051 kb on - strand at 2597.086 kb on + strand at 2597.310 kb on - strand at 2597.344 kb on - strand at 2597.359 kb on - strand at 2597.437 kb on + strand at 2598.296 kb on + strand, within Shewana3_R0098 at 2598.472 kb on - strand at 2598.887 kb on - strand, within Shewana3_2167
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,597,051 - -0.1 2,597,051 - -1.1 2,597,086 + +0.4 2,597,310 - +0.8 2,597,344 - -0.6 2,597,359 - -0.3 2,597,437 + +0.1 2,598,296 + Shewana3_R0098 0.82 +1.3 2,598,472 - -0.7 2,598,887 - Shewana3_2167 0.13 +1.9
Or see this region's nucleotide sequence