Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2126 and Shewana3_2127 are separated by 101 nucleotides Shewana3_2127 and Shewana3_2128 are separated by 272 nucleotides Shewana3_2128 and Shewana3_2129 are separated by 144 nucleotides
Shewana3_2126: Shewana3_2126 - integrase catalytic subunit (RefSeq), at 2,551,189 to 2,551,911
_2126
Shewana3_2127: Shewana3_2127 - ISPsy11, transposase OrfA (RefSeq), at 2,552,013 to 2,552,405
_2127
Shewana3_2128: Shewana3_2128 - quinolinate synthetase (RefSeq), at 2,552,678 to 2,553,751
_2128
Shewana3_2129: Shewana3_2129 - dihydrolipoamide acetyltransferase (RefSeq), at 2,553,896 to 2,555,491
_2129
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-1
0
1
2 at 2552.503 kb on - strand at 2554.271 kb on - strand, within Shewana3_2129 at 2554.291 kb on + strand, within Shewana3_2129 at 2554.299 kb on - strand, within Shewana3_2129 at 2554.384 kb on + strand, within Shewana3_2129 at 2554.392 kb on - strand, within Shewana3_2129 at 2554.593 kb on + strand, within Shewana3_2129 at 2554.611 kb on - strand, within Shewana3_2129 at 2554.688 kb on + strand, within Shewana3_2129 at 2554.701 kb on - strand, within Shewana3_2129
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,552,503 - +2.2 2,554,271 - Shewana3_2129 0.23 +1.5 2,554,291 + Shewana3_2129 0.25 -1.7 2,554,299 - Shewana3_2129 0.25 +0.4 2,554,384 + Shewana3_2129 0.31 +1.9 2,554,392 - Shewana3_2129 0.31 -1.2 2,554,593 + Shewana3_2129 0.44 +1.2 2,554,611 - Shewana3_2129 0.45 -1.4 2,554,688 + Shewana3_2129 0.50 -0.6 2,554,701 - Shewana3_2129 0.50 +0.5
Or see this region's nucleotide sequence