Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2106

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2105 and Shewana3_2106 are separated by 108 nucleotidesShewana3_2106 and Shewana3_2107 are separated by 223 nucleotides Shewana3_2105: Shewana3_2105 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 2,529,187 to 2,530,764 _2105 Shewana3_2106: Shewana3_2106 - hypothetical protein (RefSeq), at 2,530,873 to 2,531,358 _2106 Shewana3_2107: Shewana3_2107 - cytochrome c oxidase, cbb3-type, subunit I (RefSeq), at 2,531,582 to 2,533,018 _2107 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -3 -2 -1 0 1at 2530.172 kb on + strand, within Shewana3_2105at 2530.222 kb on - strand, within Shewana3_2105at 2530.325 kb on - strand, within Shewana3_2105at 2531.099 kb on - strand, within Shewana3_2106at 2531.522 kb on + strandat 2531.522 kb on + strandat 2531.612 kb on + strandat 2531.717 kb on + strandat 2531.717 kb on + strandat 2531.725 kb on - strandat 2532.124 kb on + strand, within Shewana3_2107at 2532.124 kb on + strand, within Shewana3_2107at 2532.215 kb on + strand, within Shewana3_2107at 2532.266 kb on + strand, within Shewana3_2107

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,530,172 + Shewana3_2105 0.62 -0.2
2,530,222 - Shewana3_2105 0.66 +0.8
2,530,325 - Shewana3_2105 0.72 +1.7
2,531,099 - Shewana3_2106 0.47 -1.8
2,531,522 + -0.7
2,531,522 + -0.2
2,531,612 + -2.7
2,531,717 + -3.4
2,531,717 + -3.1
2,531,725 - -1.9
2,532,124 + Shewana3_2107 0.38 -3.6
2,532,124 + Shewana3_2107 0.38 -1.2
2,532,215 + Shewana3_2107 0.44 -2.0
2,532,266 + Shewana3_2107 0.48 -3.2

Or see this region's nucleotide sequence