Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1775

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1773 and Shewana3_1774 are separated by 1 nucleotidesShewana3_1774 and Shewana3_1775 are separated by 206 nucleotidesShewana3_1775 and Shewana3_1776 are separated by 15 nucleotidesShewana3_1776 and Shewana3_1777 are separated by 275 nucleotides Shewana3_1773: Shewana3_1773 - paraquat-inducible protein A (RefSeq), at 2,089,296 to 2,089,913 _1773 Shewana3_1774: Shewana3_1774 - paraquat-inducible protein A (RefSeq), at 2,089,915 to 2,090,550 _1774 Shewana3_1775: Shewana3_1775 - YebG family protein (RefSeq), at 2,090,757 to 2,091,056 _1775 Shewana3_1776: Shewana3_1776 - putative GAF sensor protein (RefSeq), at 2,091,072 to 2,091,530 _1776 Shewana3_1777: Shewana3_1777 - putative solute/DNA competence effector (RefSeq), at 2,091,806 to 2,092,450 _1777 Position (kb) 2090 2091 2092Strain fitness (log2 ratio) -2 -1 0 1at 2089.808 kb on + strand, within Shewana3_1773at 2090.280 kb on + strand, within Shewana3_1774at 2090.389 kb on - strand, within Shewana3_1774at 2090.690 kb on - strandat 2090.847 kb on + strand, within Shewana3_1775at 2090.875 kb on - strand, within Shewana3_1775at 2091.269 kb on - strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.281 kb on + strand, within Shewana3_1776at 2091.567 kb on + strandat 2091.586 kb on - strandat 2091.629 kb on - strandat 2091.725 kb on + strandat 2091.954 kb on + strand, within Shewana3_1777at 2092.047 kb on + strand, within Shewana3_1777

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,089,808 + Shewana3_1773 0.83 -0.3
2,090,280 + Shewana3_1774 0.57 +1.1
2,090,389 - Shewana3_1774 0.75 +0.4
2,090,690 - -1.6
2,090,847 + Shewana3_1775 0.30 +0.9
2,090,875 - Shewana3_1775 0.39 +0.5
2,091,269 - Shewana3_1776 0.43 -1.4
2,091,281 + Shewana3_1776 0.46 -0.8
2,091,281 + Shewana3_1776 0.46 -0.0
2,091,281 + Shewana3_1776 0.46 -1.2
2,091,567 + +1.6
2,091,586 - -0.9
2,091,629 - -1.1
2,091,725 + +1.0
2,091,954 + Shewana3_1777 0.23 -2.4
2,092,047 + Shewana3_1777 0.37 +0.1

Or see this region's nucleotide sequence