Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1761

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetG and Shewana3_1761 are separated by 160 nucleotidesShewana3_1761 and Shewana3_1762 are separated by 11 nucleotidesShewana3_1762 and dcd are separated by 29 nucleotides Shewana3_1760: metG - methionyl-tRNA synthetase (RefSeq), at 2,073,887 to 2,075,917 metG Shewana3_1761: Shewana3_1761 - ATP-binding Mrp/Nbp35 family protein (RefSeq), at 2,076,078 to 2,077,193 _1761 Shewana3_1762: Shewana3_1762 - uridine kinase (RefSeq), at 2,077,205 to 2,077,843 _1762 Shewana3_1763: dcd - deoxycytidine triphosphate deaminase (RefSeq), at 2,077,873 to 2,078,454 dcd Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2076.174 kb on + strandat 2076.184 kb on + strandat 2076.215 kb on + strand, within Shewana3_1761at 2076.239 kb on + strand, within Shewana3_1761at 2076.244 kb on + strand, within Shewana3_1761at 2076.372 kb on + strand, within Shewana3_1761at 2076.459 kb on + strand, within Shewana3_1761at 2076.565 kb on - strand, within Shewana3_1761at 2076.580 kb on + strand, within Shewana3_1761at 2076.670 kb on + strand, within Shewana3_1761at 2076.837 kb on + strand, within Shewana3_1761at 2077.087 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,076,174 + -1.5
2,076,184 + -0.4
2,076,215 + Shewana3_1761 0.12 -2.5
2,076,239 + Shewana3_1761 0.14 -5.1
2,076,244 + Shewana3_1761 0.15 +0.3
2,076,372 + Shewana3_1761 0.26 -2.2
2,076,459 + Shewana3_1761 0.34 -2.2
2,076,565 - Shewana3_1761 0.44 -1.1
2,076,580 + Shewana3_1761 0.45 -4.2
2,076,670 + Shewana3_1761 0.53 -1.3
2,076,837 + Shewana3_1761 0.68 -2.0
2,077,087 + -2.1

Or see this region's nucleotide sequence