Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1753 and infA are separated by 103 nucleotides infA and Shewana3_1755 are separated by 82 nucleotides Shewana3_1755 and aat overlap by 11 nucleotides aat and Shewana3_1757 are separated by 81 nucleotides
Shewana3_1753: Shewana3_1753 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 2,067,010 to 2,069,277
_1753
Shewana3_1754: infA - translation initiation factor IF-1 (RefSeq), at 2,069,381 to 2,069,599
infA
Shewana3_1755: Shewana3_1755 - arginyl-tRNA-protein transferase (RefSeq), at 2,069,682 to 2,070,398
_1755
Shewana3_1756: aat - leucyl/phenylalanyl-tRNA--protein transferase (RefSeq), at 2,070,388 to 2,071,098
aat
Shewana3_1757: Shewana3_1757 - 17 kDa surface antigen (RefSeq), at 2,071,180 to 2,071,623
_1757
Position (kb)
2069
2070
2071 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2068.865 kb on + strand, within Shewana3_1753 at 2069.714 kb on - strand at 2069.744 kb on - strand at 2069.846 kb on + strand, within Shewana3_1755 at 2069.918 kb on - strand, within Shewana3_1755 at 2070.092 kb on + strand, within Shewana3_1755 at 2070.092 kb on + strand, within Shewana3_1755 at 2070.294 kb on - strand, within Shewana3_1755 at 2070.451 kb on - strand at 2070.451 kb on - strand at 2070.463 kb on - strand, within aat at 2070.510 kb on - strand, within aat at 2071.334 kb on + strand, within Shewana3_1757 at 2071.398 kb on - strand, within Shewana3_1757
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,068,865 + Shewana3_1753 0.82 -3.5 2,069,714 - -0.3 2,069,744 - +0.4 2,069,846 + Shewana3_1755 0.23 -1.0 2,069,918 - Shewana3_1755 0.33 +0.1 2,070,092 + Shewana3_1755 0.57 -0.5 2,070,092 + Shewana3_1755 0.57 +0.1 2,070,294 - Shewana3_1755 0.85 -0.4 2,070,451 - +0.3 2,070,451 - -0.7 2,070,463 - aat Shewana3_1756 0.11 +0.2 2,070,510 - aat Shewana3_1756 0.17 -0.1 2,071,334 + Shewana3_1757 0.35 +0.8 2,071,398 - Shewana3_1757 0.49 +1.5
Or see this region's nucleotide sequence