Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0079

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuvrC and Shewana3_1610 are separated by 47 nucleotidesShewana3_1610 and Shewana3_R0079 are separated by 210 nucleotidesShewana3_R0079 and Shewana3_R0080 are separated by 20 nucleotidesShewana3_R0080 and Shewana3_R0081 are separated by 48 nucleotidesShewana3_R0081 and Shewana3_R0082 are separated by 131 nucleotides Shewana3_1609: uvrC - excinuclease ABC subunit C (RefSeq), at 1,889,881 to 1,891,710 uvrC Shewana3_1610: Shewana3_1610 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (RefSeq), at 1,891,758 to 1,892,306 _1610 Shewana3_R0079: Shewana3_R0079 - tRNA-Gly (RefSeq), at 1,892,517 to 1,892,592 _R0079 Shewana3_R0080: Shewana3_R0080 - tRNA-Cys (RefSeq), at 1,892,613 to 1,892,686 _R0080 Shewana3_R0081: Shewana3_R0081 - tRNA-Leu (RefSeq), at 1,892,735 to 1,892,821 _R0081 Shewana3_R0082: Shewana3_R0082 - tRNA-Leu (RefSeq), at 1,892,953 to 1,893,039 _R0082 Position (kb) 1892 1893Strain fitness (log2 ratio) -2 -1 0 1at 1891.578 kb on - strandat 1891.579 kb on - strandat 1891.589 kb on - strandat 1892.555 kb on + strand, within Shewana3_R0079at 1892.569 kb on + strand, within Shewana3_R0079at 1893.016 kb on + strand, within Shewana3_R0082at 1893.282 kb on + strandat 1893.559 kb on + strandat 1893.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,891,578 - +0.1
1,891,579 - -0.5
1,891,589 - -0.7
1,892,555 + Shewana3_R0079 0.50 -2.1
1,892,569 + Shewana3_R0079 0.68 -1.5
1,893,016 + Shewana3_R0082 0.72 +0.2
1,893,282 + -1.5
1,893,559 + -1.2
1,893,585 - -1.0

Or see this region's nucleotide sequence