Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1599 and Shewana3_1600 are separated by 135 nucleotides Shewana3_1600 and Shewana3_R0074 are separated by 429 nucleotides Shewana3_R0074 and Shewana3_R0075 are separated by 33 nucleotides Shewana3_R0075 and Shewana3_R0076 are separated by 62 nucleotides Shewana3_R0076 and rlmL are separated by 257 nucleotides
Shewana3_1599: Shewana3_1599 - hypothetical protein (RefSeq), at 1,876,627 to 1,877,166
_1599
Shewana3_1600: Shewana3_1600 - heat shock protein DnaJ domain-containing protein (RefSeq), at 1,877,302 to 1,877,586
_1600
Shewana3_R0074: Shewana3_R0074 - tRNA-Met (RefSeq), at 1,878,016 to 1,878,092
_R0074
Shewana3_R0075: Shewana3_R0075 - tRNA-Met (RefSeq), at 1,878,126 to 1,878,202
_R0075
Shewana3_R0076: Shewana3_R0076 - tRNA-Met (RefSeq), at 1,878,265 to 1,878,341
_R0076
Shewana3_1601: rlmL - 23S rRNA m(2)G2445 methyltransferase (RefSeq), at 1,878,599 to 1,880,740
rlmL
Position (kb)
1878
1879 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1877.387 kb on + strand, within Shewana3_1600 at 1877.395 kb on - strand, within Shewana3_1600 at 1877.477 kb on + strand, within Shewana3_1600 at 1877.561 kb on - strand at 1877.568 kb on + strand at 1877.809 kb on - strand at 1878.481 kb on + strand at 1878.489 kb on - strand at 1878.566 kb on - strand at 1878.573 kb on + strand at 1878.621 kb on + strand at 1878.638 kb on - strand at 1878.679 kb on + strand at 1878.735 kb on + strand at 1878.735 kb on + strand at 1878.735 kb on + strand at 1878.740 kb on + strand at 1878.743 kb on - strand at 1878.743 kb on - strand at 1878.743 kb on - strand at 1878.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,877,387 + Shewana3_1600 0.30 -1.6 1,877,395 - Shewana3_1600 0.33 -0.2 1,877,477 + Shewana3_1600 0.61 -2.1 1,877,561 - -3.3 1,877,568 + -1.8 1,877,809 - -0.7 1,878,481 + -0.1 1,878,489 - +1.5 1,878,566 - +0.2 1,878,573 + +0.2 1,878,621 + -1.5 1,878,638 - +0.2 1,878,679 + -1.0 1,878,735 + -2.1 1,878,735 + +0.7 1,878,735 + -1.8 1,878,740 + -1.6 1,878,743 - -1.6 1,878,743 - +0.8 1,878,743 - -0.5 1,878,797 - -1.3
Or see this region's nucleotide sequence