Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0075

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1599 and Shewana3_1600 are separated by 135 nucleotidesShewana3_1600 and Shewana3_R0074 are separated by 429 nucleotidesShewana3_R0074 and Shewana3_R0075 are separated by 33 nucleotidesShewana3_R0075 and Shewana3_R0076 are separated by 62 nucleotidesShewana3_R0076 and rlmL are separated by 257 nucleotides Shewana3_1599: Shewana3_1599 - hypothetical protein (RefSeq), at 1,876,627 to 1,877,166 _1599 Shewana3_1600: Shewana3_1600 - heat shock protein DnaJ domain-containing protein (RefSeq), at 1,877,302 to 1,877,586 _1600 Shewana3_R0074: Shewana3_R0074 - tRNA-Met (RefSeq), at 1,878,016 to 1,878,092 _R0074 Shewana3_R0075: Shewana3_R0075 - tRNA-Met (RefSeq), at 1,878,126 to 1,878,202 _R0075 Shewana3_R0076: Shewana3_R0076 - tRNA-Met (RefSeq), at 1,878,265 to 1,878,341 _R0076 Shewana3_1601: rlmL - 23S rRNA m(2)G2445 methyltransferase (RefSeq), at 1,878,599 to 1,880,740 rlmL Position (kb) 1878 1879Strain fitness (log2 ratio) -3 -2 -1 0 1at 1877.387 kb on + strand, within Shewana3_1600at 1877.395 kb on - strand, within Shewana3_1600at 1877.477 kb on + strand, within Shewana3_1600at 1877.561 kb on - strandat 1877.568 kb on + strandat 1877.809 kb on - strandat 1878.481 kb on + strandat 1878.489 kb on - strandat 1878.566 kb on - strandat 1878.573 kb on + strandat 1878.621 kb on + strandat 1878.638 kb on - strandat 1878.679 kb on + strandat 1878.735 kb on + strandat 1878.735 kb on + strandat 1878.735 kb on + strandat 1878.740 kb on + strandat 1878.743 kb on - strandat 1878.743 kb on - strandat 1878.743 kb on - strandat 1878.797 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,877,387 + Shewana3_1600 0.30 -1.6
1,877,395 - Shewana3_1600 0.33 -0.2
1,877,477 + Shewana3_1600 0.61 -2.1
1,877,561 - -3.3
1,877,568 + -1.8
1,877,809 - -0.7
1,878,481 + -0.1
1,878,489 - +1.5
1,878,566 - +0.2
1,878,573 + +0.2
1,878,621 + -1.5
1,878,638 - +0.2
1,878,679 + -1.0
1,878,735 + -2.1
1,878,735 + +0.7
1,878,735 + -1.8
1,878,740 + -1.6
1,878,743 - -1.6
1,878,743 - +0.8
1,878,743 - -0.5
1,878,797 - -1.3

Or see this region's nucleotide sequence