Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1573

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1572 and Shewana3_1573 are separated by 100 nucleotidesShewana3_1573 and Shewana3_1574 are separated by 712 nucleotidesShewana3_1574 and Shewana3_1575 are separated by 11 nucleotides Shewana3_1572: Shewana3_1572 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,840,055 to 1,840,912 _1572 Shewana3_1573: Shewana3_1573 - DSBA oxidoreductase (RefSeq), at 1,841,013 to 1,841,666 _1573 Shewana3_1574: Shewana3_1574 - hypothetical protein (RefSeq), at 1,842,379 to 1,842,645 _1574 Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393 _1575 Position (kb) 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2at 1840.380 kb on + strand, within Shewana3_1572at 1840.426 kb on + strand, within Shewana3_1572at 1840.697 kb on + strand, within Shewana3_1572at 1841.193 kb on - strand, within Shewana3_1573at 1841.605 kb on + strandat 1841.613 kb on - strandat 1841.620 kb on + strandat 1841.682 kb on + strandat 1841.682 kb on + strandat 1841.682 kb on + strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1841.690 kb on - strandat 1842.196 kb on - strandat 1842.329 kb on - strandat 1842.363 kb on + strandat 1842.402 kb on + strandat 1842.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,840,380 + Shewana3_1572 0.38 +0.5
1,840,426 + Shewana3_1572 0.43 +0.8
1,840,697 + Shewana3_1572 0.75 +0.2
1,841,193 - Shewana3_1573 0.28 +0.7
1,841,605 + +0.5
1,841,613 - +0.9
1,841,620 + -1.6
1,841,682 + -1.0
1,841,682 + -1.9
1,841,682 + -0.6
1,841,690 - +0.5
1,841,690 - -0.4
1,841,690 - -2.1
1,841,690 - +0.9
1,842,196 - +2.6
1,842,329 - +2.2
1,842,363 + +1.7
1,842,402 + +2.0
1,842,639 + +0.9

Or see this region's nucleotide sequence