Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1572 and Shewana3_1573 are separated by 100 nucleotides Shewana3_1573 and Shewana3_1574 are separated by 712 nucleotides Shewana3_1574 and Shewana3_1575 are separated by 11 nucleotides
Shewana3_1572: Shewana3_1572 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,840,055 to 1,840,912
_1572
Shewana3_1573: Shewana3_1573 - DSBA oxidoreductase (RefSeq), at 1,841,013 to 1,841,666
_1573
Shewana3_1574: Shewana3_1574 - hypothetical protein (RefSeq), at 1,842,379 to 1,842,645
_1574
Shewana3_1575: Shewana3_1575 - Na+/solute symporter (RefSeq), at 1,842,657 to 1,844,393
_1575
Position (kb)
1841
1842 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1840.380 kb on + strand, within Shewana3_1572 at 1840.426 kb on + strand, within Shewana3_1572 at 1840.697 kb on + strand, within Shewana3_1572 at 1841.193 kb on - strand, within Shewana3_1573 at 1841.605 kb on + strand at 1841.613 kb on - strand at 1841.620 kb on + strand at 1841.682 kb on + strand at 1841.682 kb on + strand at 1841.682 kb on + strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1841.690 kb on - strand at 1842.196 kb on - strand at 1842.329 kb on - strand at 1842.363 kb on + strand at 1842.402 kb on + strand at 1842.639 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,840,380 + Shewana3_1572 0.38 +0.5 1,840,426 + Shewana3_1572 0.43 +0.8 1,840,697 + Shewana3_1572 0.75 +0.2 1,841,193 - Shewana3_1573 0.28 +0.7 1,841,605 + +0.5 1,841,613 - +0.9 1,841,620 + -1.6 1,841,682 + -1.0 1,841,682 + -1.9 1,841,682 + -0.6 1,841,690 - +0.5 1,841,690 - -0.4 1,841,690 - -2.1 1,841,690 - +0.9 1,842,196 - +2.6 1,842,329 - +2.2 1,842,363 + +1.7 1,842,402 + +2.0 1,842,639 + +0.9
Or see this region's nucleotide sequence