Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1422 and Shewana3_1423 are separated by 65 nucleotides Shewana3_1423 and Shewana3_1424 are separated by 34 nucleotides Shewana3_1424 and Shewana3_1425 are separated by 91 nucleotides
Shewana3_1422: Shewana3_1422 - 4a-hydroxytetrahydrobiopterin dehydratase (RefSeq), at 1,651,742 to 1,653,025
_1422
Shewana3_1423: Shewana3_1423 - Dual specificity protein phosphatase (RefSeq), at 1,653,091 to 1,653,561
_1423
Shewana3_1424: Shewana3_1424 - phospholipase D/transphosphatidylase (RefSeq), at 1,653,596 to 1,655,230
_1424
Shewana3_1425: Shewana3_1425 - response regulator receiver modulated CheW protein (RefSeq), at 1,655,322 to 1,656,221
_1425
Position (kb)
1653
1654
1655
1656 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1653.177 kb on - strand, within Shewana3_1423 at 1653.191 kb on + strand, within Shewana3_1423 at 1653.357 kb on - strand, within Shewana3_1423 at 1653.400 kb on + strand, within Shewana3_1423 at 1653.817 kb on - strand, within Shewana3_1424 at 1654.067 kb on + strand, within Shewana3_1424 at 1654.123 kb on + strand, within Shewana3_1424 at 1654.183 kb on + strand, within Shewana3_1424 at 1654.446 kb on - strand, within Shewana3_1424 at 1654.868 kb on - strand, within Shewana3_1424 at 1655.078 kb on + strand at 1655.224 kb on - strand at 1655.229 kb on + strand at 1655.332 kb on + strand at 1655.381 kb on + strand at 1655.381 kb on + strand at 1655.420 kb on + strand, within Shewana3_1425 at 1655.428 kb on - strand, within Shewana3_1425 at 1655.542 kb on + strand, within Shewana3_1425 at 1655.550 kb on - strand, within Shewana3_1425
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,653,177 - Shewana3_1423 0.18 +0.1 1,653,191 + Shewana3_1423 0.21 +0.0 1,653,357 - Shewana3_1423 0.56 -0.3 1,653,400 + Shewana3_1423 0.66 -0.8 1,653,817 - Shewana3_1424 0.14 -0.1 1,654,067 + Shewana3_1424 0.29 +0.7 1,654,123 + Shewana3_1424 0.32 +1.1 1,654,183 + Shewana3_1424 0.36 -0.6 1,654,446 - Shewana3_1424 0.52 +0.3 1,654,868 - Shewana3_1424 0.78 -1.3 1,655,078 + -1.9 1,655,224 - +1.1 1,655,229 + -1.0 1,655,332 + +1.9 1,655,381 + -0.3 1,655,381 + +0.7 1,655,420 + Shewana3_1425 0.11 +0.2 1,655,428 - Shewana3_1425 0.12 -0.4 1,655,542 + Shewana3_1425 0.24 -1.3 1,655,550 - Shewana3_1425 0.25 +1.7
Or see this region's nucleotide sequence