Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1423

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1422 and Shewana3_1423 are separated by 65 nucleotidesShewana3_1423 and Shewana3_1424 are separated by 34 nucleotides Shewana3_1422: Shewana3_1422 - 4a-hydroxytetrahydrobiopterin dehydratase (RefSeq), at 1,651,742 to 1,653,025 _1422 Shewana3_1423: Shewana3_1423 - Dual specificity protein phosphatase (RefSeq), at 1,653,091 to 1,653,561 _1423 Shewana3_1424: Shewana3_1424 - phospholipase D/transphosphatidylase (RefSeq), at 1,653,596 to 1,655,230 _1424 Position (kb) 1653 1654Strain fitness (log2 ratio) -1 0 1at 1652.577 kb on + strand, within Shewana3_1422at 1653.177 kb on - strand, within Shewana3_1423at 1653.191 kb on + strand, within Shewana3_1423at 1653.357 kb on - strand, within Shewana3_1423at 1653.400 kb on + strand, within Shewana3_1423at 1653.817 kb on - strand, within Shewana3_1424at 1654.067 kb on + strand, within Shewana3_1424at 1654.123 kb on + strand, within Shewana3_1424at 1654.183 kb on + strand, within Shewana3_1424at 1654.446 kb on - strand, within Shewana3_1424

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,652,577 + Shewana3_1422 0.65 -0.6
1,653,177 - Shewana3_1423 0.18 +0.1
1,653,191 + Shewana3_1423 0.21 +0.0
1,653,357 - Shewana3_1423 0.56 -0.3
1,653,400 + Shewana3_1423 0.66 -0.8
1,653,817 - Shewana3_1424 0.14 -0.1
1,654,067 + Shewana3_1424 0.29 +0.7
1,654,123 + Shewana3_1424 0.32 +1.1
1,654,183 + Shewana3_1424 0.36 -0.6
1,654,446 - Shewana3_1424 0.52 +0.3

Or see this region's nucleotide sequence