Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1420 and Shewana3_1421 are separated by 128 nucleotides Shewana3_1421 and Shewana3_1422 are separated by 37 nucleotides Shewana3_1422 and Shewana3_1423 are separated by 65 nucleotides Shewana3_1423 and Shewana3_1424 are separated by 34 nucleotides
Shewana3_1420: Shewana3_1420 - transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II (RefSeq), at 1,649,381 to 1,651,009
_1420
Shewana3_1421: Shewana3_1421 - methylated-DNA--protein-cysteine methyltransferase (RefSeq), at 1,651,138 to 1,651,704
_1421
Shewana3_1422: Shewana3_1422 - 4a-hydroxytetrahydrobiopterin dehydratase (RefSeq), at 1,651,742 to 1,653,025
_1422
Shewana3_1423: Shewana3_1423 - Dual specificity protein phosphatase (RefSeq), at 1,653,091 to 1,653,561
_1423
Shewana3_1424: Shewana3_1424 - phospholipase D/transphosphatidylase (RefSeq), at 1,653,596 to 1,655,230
_1424
Position (kb) 1651
1652
1653
1654 Strain fitness (log2 ratio) -1
0
1 at 1651.132 kb on + strand at 1651.146 kb on + strand at 1651.335 kb on + strand, within Shewana3_1421 at 1651.335 kb on + strand, within Shewana3_1421 at 1651.412 kb on + strand, within Shewana3_1421 at 1651.529 kb on - strand, within Shewana3_1421 at 1651.825 kb on - strand at 1652.577 kb on + strand, within Shewana3_1422 at 1653.177 kb on - strand, within Shewana3_1423 at 1653.191 kb on + strand, within Shewana3_1423 at 1653.357 kb on - strand, within Shewana3_1423 at 1653.400 kb on + strand, within Shewana3_1423 at 1653.817 kb on - strand, within Shewana3_1424
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,651,132 + -0.2 1,651,146 + -0.4 1,651,335 + Shewana3_1421 0.35 +1.3 1,651,335 + Shewana3_1421 0.35 +1.1 1,651,412 + Shewana3_1421 0.48 +1.4 1,651,529 - Shewana3_1421 0.69 -1.5 1,651,825 - -1.4 1,652,577 + Shewana3_1422 0.65 -0.6 1,653,177 - Shewana3_1423 0.18 +0.1 1,653,191 + Shewana3_1423 0.21 +0.0 1,653,357 - Shewana3_1423 0.56 -0.3 1,653,400 + Shewana3_1423 0.66 -0.8 1,653,817 - Shewana3_1424 0.14 -0.1
Or see this region's nucleotide sequence