Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1395

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1393 and Shewana3_1394 overlap by 1 nucleotidesShewana3_1394 and Shewana3_1395 are separated by 10 nucleotidesShewana3_1395 and Shewana3_1396 are separated by 151 nucleotidesShewana3_1396 and Shewana3_1397 are separated by 271 nucleotides Shewana3_1393: Shewana3_1393 - protein of unknown function DUF940, membrane lipoprotein putative (RefSeq), at 1,607,657 to 1,610,032 _1393 Shewana3_1394: Shewana3_1394 - hypothetical protein (RefSeq), at 1,610,032 to 1,610,820 _1394 Shewana3_1395: Shewana3_1395 - putative lipoprotein (RefSeq), at 1,610,831 to 1,611,541 _1395 Shewana3_1396: Shewana3_1396 - hypothetical protein (RefSeq), at 1,611,693 to 1,611,941 _1396 Shewana3_1397: Shewana3_1397 - patatin (RefSeq), at 1,612,213 to 1,613,337 _1397 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -3 -2 -1 0 1at 1610.133 kb on - strand, within Shewana3_1394at 1610.252 kb on - strand, within Shewana3_1394at 1610.485 kb on - strand, within Shewana3_1394at 1610.583 kb on - strand, within Shewana3_1394at 1610.824 kb on + strandat 1611.335 kb on + strand, within Shewana3_1395at 1611.402 kb on - strand, within Shewana3_1395at 1611.414 kb on - strand, within Shewana3_1395at 1611.456 kb on + strandat 1611.484 kb on + strandat 1611.717 kb on - strandat 1611.873 kb on - strand, within Shewana3_1396at 1612.133 kb on - strandat 1612.133 kb on - strandat 1612.133 kb on - strandat 1612.141 kb on + strandat 1612.292 kb on + strandat 1612.387 kb on - strand, within Shewana3_1397at 1612.422 kb on + strand, within Shewana3_1397at 1612.460 kb on - strand, within Shewana3_1397

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,610,133 - Shewana3_1394 0.13 -0.4
1,610,252 - Shewana3_1394 0.28 -1.5
1,610,485 - Shewana3_1394 0.57 -0.5
1,610,583 - Shewana3_1394 0.70 -2.9
1,610,824 + +0.0
1,611,335 + Shewana3_1395 0.71 -2.4
1,611,402 - Shewana3_1395 0.80 -0.4
1,611,414 - Shewana3_1395 0.82 -2.7
1,611,456 + -0.7
1,611,484 + -2.0
1,611,717 - +0.7
1,611,873 - Shewana3_1396 0.72 -1.0
1,612,133 - -1.0
1,612,133 - -1.9
1,612,133 - -0.1
1,612,141 + +1.1
1,612,292 + -0.4
1,612,387 - Shewana3_1397 0.15 -0.6
1,612,422 + Shewana3_1397 0.19 -1.0
1,612,460 - Shewana3_1397 0.22 -0.3

Or see this region's nucleotide sequence