Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliI and Shewana3_1346 are separated by 11 nucleotides Shewana3_1346 and Shewana3_1347 are separated by 159 nucleotides Shewana3_1347 and fliL are separated by 82 nucleotides fliL and fliM are separated by 40 nucleotides
Shewana3_1345: fliI - flagellum-specific ATP synthase (RefSeq), at 1,558,558 to 1,559,895
fliI
Shewana3_1346: Shewana3_1346 - flagellar export protein FliJ (RefSeq), at 1,559,907 to 1,560,353
_1346
Shewana3_1347: Shewana3_1347 - flagellar hook-length control protein (RefSeq), at 1,560,513 to 1,562,252
_1347
Shewana3_1348: fliL - flagellar basal body-associated protein FliL (RefSeq), at 1,562,335 to 1,562,859
fliL
Shewana3_1349: fliM - flagellar motor switch protein FliM (RefSeq), at 1,562,900 to 1,563,931
fliM
Position (kb)
1560
1561
1562
1563 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 1559.783 kb on + strand at 1559.813 kb on + strand at 1559.844 kb on - strand at 1560.669 kb on - strand at 1560.892 kb on + strand, within Shewana3_1347 at 1561.055 kb on + strand, within Shewana3_1347 at 1561.239 kb on + strand, within Shewana3_1347 at 1561.276 kb on - strand, within Shewana3_1347 at 1561.327 kb on + strand, within Shewana3_1347 at 1561.470 kb on + strand, within Shewana3_1347 at 1561.725 kb on - strand, within Shewana3_1347 at 1561.727 kb on + strand, within Shewana3_1347 at 1561.856 kb on + strand, within Shewana3_1347 at 1562.002 kb on - strand, within Shewana3_1347 at 1562.017 kb on + strand, within Shewana3_1347 at 1562.468 kb on + strand, within fliL at 1562.705 kb on + strand, within fliL at 1563.175 kb on + strand, within fliM at 1563.241 kb on - strand, within fliM
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,559,783 + +5.0 1,559,813 + -5.4 1,559,844 - +4.6 1,560,669 - +3.0 1,560,892 + Shewana3_1347 0.22 +1.9 1,561,055 + Shewana3_1347 0.31 +4.0 1,561,239 + Shewana3_1347 0.42 +1.8 1,561,276 - Shewana3_1347 0.44 +4.9 1,561,327 + Shewana3_1347 0.47 +1.8 1,561,470 + Shewana3_1347 0.55 +5.3 1,561,725 - Shewana3_1347 0.70 +1.8 1,561,727 + Shewana3_1347 0.70 +3.1 1,561,856 + Shewana3_1347 0.77 +3.3 1,562,002 - Shewana3_1347 0.86 +2.8 1,562,017 + Shewana3_1347 0.86 +3.3 1,562,468 + fliL Shewana3_1348 0.25 +3.3 1,562,705 + fliL Shewana3_1348 0.70 +2.2 1,563,175 + fliM Shewana3_1349 0.27 +6.1 1,563,241 - fliM Shewana3_1349 0.33 +5.2
Or see this region's nucleotide sequence