Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1315

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1313 and Shewana3_1314 are separated by 239 nucleotidesShewana3_1314 and Shewana3_1315 overlap by 4 nucleotidesShewana3_1315 and Shewana3_1316 are separated by 102 nucleotidesShewana3_1316 and Shewana3_1317 are separated by 2 nucleotidesShewana3_1317 and flgA are separated by 75 nucleotides Shewana3_1313: Shewana3_1313 - hypothetical protein (RefSeq), at 1,528,145 to 1,529,311 _1313 Shewana3_1314: Shewana3_1314 - hypothetical protein (RefSeq), at 1,529,551 to 1,530,183 _1314 Shewana3_1315: Shewana3_1315 - hypothetical protein (RefSeq), at 1,530,180 to 1,530,629 _1315 Shewana3_1316: Shewana3_1316 - FlgN family protein (RefSeq), at 1,530,732 to 1,531,157 _1316 Shewana3_1317: Shewana3_1317 - anti-sigma-28 factor, FlgM (RefSeq), at 1,531,160 to 1,531,486 _1317 Shewana3_1318: flgA - flagellar basal body P-ring biosynthesis protein FlgA (RefSeq), at 1,531,562 to 1,532,269 flgA Position (kb) 1530 1531Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1529.321 kb on - strandat 1529.369 kb on - strandat 1529.420 kb on + strandat 1529.438 kb on + strandat 1529.473 kb on + strandat 1529.473 kb on + strandat 1529.481 kb on - strandat 1529.554 kb on - strandat 1529.561 kb on - strandat 1529.592 kb on + strandat 1529.715 kb on + strand, within Shewana3_1314at 1529.751 kb on + strand, within Shewana3_1314at 1529.959 kb on - strand, within Shewana3_1314at 1530.092 kb on + strand, within Shewana3_1314at 1530.202 kb on - strandat 1530.472 kb on - strand, within Shewana3_1315at 1530.496 kb on + strand, within Shewana3_1315at 1530.593 kb on - strandat 1530.638 kb on - strandat 1530.658 kb on + strandat 1531.098 kb on - strand, within Shewana3_1316at 1531.133 kb on - strandat 1531.196 kb on - strand, within Shewana3_1317at 1531.336 kb on - strand, within Shewana3_1317at 1531.520 kb on - strandat 1531.623 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,529,321 - +0.8
1,529,369 - -1.3
1,529,420 + -0.9
1,529,438 + -0.9
1,529,473 + -0.1
1,529,473 + +0.9
1,529,481 - +0.5
1,529,554 - +0.8
1,529,561 - +2.5
1,529,592 + +1.0
1,529,715 + Shewana3_1314 0.26 +0.7
1,529,751 + Shewana3_1314 0.32 +0.0
1,529,959 - Shewana3_1314 0.64 -0.5
1,530,092 + Shewana3_1314 0.85 +0.6
1,530,202 - +0.4
1,530,472 - Shewana3_1315 0.65 +1.8
1,530,496 + Shewana3_1315 0.70 -2.7
1,530,593 - -1.2
1,530,638 - +0.1
1,530,658 + +0.7
1,531,098 - Shewana3_1316 0.86 +3.5
1,531,133 - +3.6
1,531,196 - Shewana3_1317 0.11 +1.1
1,531,336 - Shewana3_1317 0.54 -0.6
1,531,520 - -2.1
1,531,623 - +2.9

Or see this region's nucleotide sequence