Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1297

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1296 and Shewana3_1297 are separated by 137 nucleotidesShewana3_1297 and Shewana3_1298 are separated by 113 nucleotides Shewana3_1296: Shewana3_1296 - RND family efflux transporter MFP subunit (RefSeq), at 1,509,711 to 1,510,832 _1296 Shewana3_1297: Shewana3_1297 - TetR family transcriptional regulator (RefSeq), at 1,510,970 to 1,511,590 _1297 Shewana3_1298: Shewana3_1298 - hypothetical protein (RefSeq), at 1,511,704 to 1,512,651 _1298 Position (kb) 1510 1511 1512Strain fitness (log2 ratio) -2 -1 0 1at 1509.981 kb on + strand, within Shewana3_1296at 1510.185 kb on + strand, within Shewana3_1296at 1510.218 kb on + strand, within Shewana3_1296at 1510.226 kb on - strand, within Shewana3_1296at 1510.226 kb on - strand, within Shewana3_1296at 1510.254 kb on - strand, within Shewana3_1296at 1510.576 kb on - strand, within Shewana3_1296at 1510.647 kb on + strand, within Shewana3_1296at 1510.665 kb on - strand, within Shewana3_1296at 1510.742 kb on - strandat 1510.899 kb on + strandat 1510.899 kb on + strandat 1510.899 kb on + strandat 1510.918 kb on + strandat 1510.918 kb on + strandat 1510.921 kb on - strandat 1510.966 kb on + strandat 1510.973 kb on + strandat 1511.129 kb on + strand, within Shewana3_1297at 1511.214 kb on + strand, within Shewana3_1297at 1511.304 kb on - strand, within Shewana3_1297at 1511.366 kb on + strand, within Shewana3_1297at 1511.463 kb on + strand, within Shewana3_1297at 1511.569 kb on + strandat 1511.601 kb on - strandat 1511.603 kb on + strandat 1511.696 kb on + strandat 1511.808 kb on + strand, within Shewana3_1298at 1511.909 kb on + strand, within Shewana3_1298at 1512.037 kb on + strand, within Shewana3_1298at 1512.050 kb on - strand, within Shewana3_1298at 1512.192 kb on + strand, within Shewana3_1298at 1512.200 kb on - strand, within Shewana3_1298at 1512.200 kb on - strand, within Shewana3_1298at 1512.202 kb on - strand, within Shewana3_1298

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,509,981 + Shewana3_1296 0.24 -2.0
1,510,185 + Shewana3_1296 0.42 -0.9
1,510,218 + Shewana3_1296 0.45 -0.4
1,510,226 - Shewana3_1296 0.46 -0.8
1,510,226 - Shewana3_1296 0.46 -0.5
1,510,254 - Shewana3_1296 0.48 +0.7
1,510,576 - Shewana3_1296 0.77 -1.2
1,510,647 + Shewana3_1296 0.83 -0.0
1,510,665 - Shewana3_1296 0.85 +0.2
1,510,742 - -1.1
1,510,899 + -1.0
1,510,899 + -0.5
1,510,899 + -0.5
1,510,918 + -0.4
1,510,918 + -1.7
1,510,921 - -0.2
1,510,966 + +1.1
1,510,973 + -0.3
1,511,129 + Shewana3_1297 0.26 +0.8
1,511,214 + Shewana3_1297 0.39 -2.2
1,511,304 - Shewana3_1297 0.54 -0.6
1,511,366 + Shewana3_1297 0.64 +0.0
1,511,463 + Shewana3_1297 0.79 +0.0
1,511,569 + +0.1
1,511,601 - -0.5
1,511,603 + -0.1
1,511,696 + +0.3
1,511,808 + Shewana3_1298 0.11 -0.9
1,511,909 + Shewana3_1298 0.22 +0.1
1,512,037 + Shewana3_1298 0.35 +0.3
1,512,050 - Shewana3_1298 0.36 +1.6
1,512,192 + Shewana3_1298 0.51 +0.9
1,512,200 - Shewana3_1298 0.52 +0.8
1,512,200 - Shewana3_1298 0.52 +0.2
1,512,202 - Shewana3_1298 0.53 +0.9

Or see this region's nucleotide sequence