Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1201 and Shewana3_1202 are separated by 149 nucleotides Shewana3_1202 and Shewana3_1203 are separated by 179 nucleotides Shewana3_1203 and Shewana3_1204 are separated by 353 nucleotides
Shewana3_1201: Shewana3_1201 - translation initiation factor Sui1 (RefSeq), at 1,407,047 to 1,407,376
_1201
Shewana3_1202: Shewana3_1202 - hypothetical protein (RefSeq), at 1,407,526 to 1,407,840
_1202
Shewana3_1203: Shewana3_1203 - hypothetical protein (RefSeq), at 1,408,020 to 1,408,580
_1203
Shewana3_1204: Shewana3_1204 - putative transporter, required for glycine and L-alanine utilization (from data) , at 1,408,934 to 1,409,575
_1204
Position (kb)
1408
1409 Strain fitness (log2 ratio)
-2
-1
0
1 at 1407.195 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.244 kb on - strand, within Shewana3_1201 at 1407.501 kb on + strand at 1407.678 kb on - strand, within Shewana3_1202 at 1407.751 kb on - strand, within Shewana3_1202 at 1407.758 kb on - strand, within Shewana3_1202 at 1407.916 kb on - strand at 1407.939 kb on + strand at 1408.118 kb on + strand, within Shewana3_1203 at 1408.118 kb on + strand, within Shewana3_1203 at 1408.125 kb on + strand, within Shewana3_1203 at 1408.126 kb on - strand, within Shewana3_1203 at 1408.126 kb on - strand, within Shewana3_1203 at 1408.229 kb on + strand, within Shewana3_1203 at 1408.230 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.353 kb on + strand, within Shewana3_1203 at 1408.361 kb on - strand, within Shewana3_1203 at 1408.361 kb on - strand, within Shewana3_1203 at 1408.786 kb on + strand at 1409.087 kb on - strand, within Shewana3_1204 at 1409.225 kb on + strand, within Shewana3_1204 at 1409.417 kb on + strand, within Shewana3_1204 at 1409.425 kb on - strand, within Shewana3_1204 at 1409.463 kb on + strand, within Shewana3_1204 at 1409.471 kb on - strand, within Shewana3_1204 at 1409.475 kb on + strand, within Shewana3_1204 at 1409.475 kb on + strand, within Shewana3_1204
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,407,195 - Shewana3_1201 0.45 -0.7 1,407,244 - Shewana3_1201 0.60 -0.6 1,407,244 - Shewana3_1201 0.60 -1.1 1,407,501 + -0.7 1,407,678 - Shewana3_1202 0.48 -2.3 1,407,751 - Shewana3_1202 0.71 -0.3 1,407,758 - Shewana3_1202 0.74 -2.0 1,407,916 - +0.2 1,407,939 + +0.5 1,408,118 + Shewana3_1203 0.17 +0.5 1,408,118 + Shewana3_1203 0.17 -0.2 1,408,125 + Shewana3_1203 0.19 +0.9 1,408,126 - Shewana3_1203 0.19 +1.0 1,408,126 - Shewana3_1203 0.19 -0.5 1,408,229 + Shewana3_1203 0.37 -0.3 1,408,230 + Shewana3_1203 0.37 +0.1 1,408,353 + Shewana3_1203 0.59 -0.1 1,408,353 + Shewana3_1203 0.59 +0.6 1,408,353 + Shewana3_1203 0.59 -0.8 1,408,361 - Shewana3_1203 0.61 +0.3 1,408,361 - Shewana3_1203 0.61 +0.4 1,408,786 + +0.2 1,409,087 - Shewana3_1204 0.24 -1.6 1,409,225 + Shewana3_1204 0.45 -0.5 1,409,417 + Shewana3_1204 0.75 +0.7 1,409,425 - Shewana3_1204 0.76 -1.7 1,409,463 + Shewana3_1204 0.82 +0.6 1,409,471 - Shewana3_1204 0.84 -1.8 1,409,475 + Shewana3_1204 0.84 -0.1 1,409,475 + Shewana3_1204 0.84 -0.3
Or see this region's nucleotide sequence