Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1203

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1201 and Shewana3_1202 are separated by 149 nucleotidesShewana3_1202 and Shewana3_1203 are separated by 179 nucleotidesShewana3_1203 and Shewana3_1204 are separated by 353 nucleotides Shewana3_1201: Shewana3_1201 - translation initiation factor Sui1 (RefSeq), at 1,407,047 to 1,407,376 _1201 Shewana3_1202: Shewana3_1202 - hypothetical protein (RefSeq), at 1,407,526 to 1,407,840 _1202 Shewana3_1203: Shewana3_1203 - hypothetical protein (RefSeq), at 1,408,020 to 1,408,580 _1203 Shewana3_1204: Shewana3_1204 - putative transporter, required for glycine and L-alanine utilization (from data), at 1,408,934 to 1,409,575 _1204 Position (kb) 1408 1409Strain fitness (log2 ratio) -2 -1 0 1at 1407.195 kb on - strand, within Shewana3_1201at 1407.244 kb on - strand, within Shewana3_1201at 1407.244 kb on - strand, within Shewana3_1201at 1407.501 kb on + strandat 1407.678 kb on - strand, within Shewana3_1202at 1407.751 kb on - strand, within Shewana3_1202at 1407.758 kb on - strand, within Shewana3_1202at 1407.916 kb on - strandat 1407.939 kb on + strandat 1408.118 kb on + strand, within Shewana3_1203at 1408.118 kb on + strand, within Shewana3_1203at 1408.125 kb on + strand, within Shewana3_1203at 1408.126 kb on - strand, within Shewana3_1203at 1408.126 kb on - strand, within Shewana3_1203at 1408.229 kb on + strand, within Shewana3_1203at 1408.230 kb on + strand, within Shewana3_1203at 1408.353 kb on + strand, within Shewana3_1203at 1408.353 kb on + strand, within Shewana3_1203at 1408.353 kb on + strand, within Shewana3_1203at 1408.361 kb on - strand, within Shewana3_1203at 1408.361 kb on - strand, within Shewana3_1203at 1408.786 kb on + strandat 1409.087 kb on - strand, within Shewana3_1204at 1409.225 kb on + strand, within Shewana3_1204at 1409.417 kb on + strand, within Shewana3_1204at 1409.425 kb on - strand, within Shewana3_1204at 1409.463 kb on + strand, within Shewana3_1204at 1409.471 kb on - strand, within Shewana3_1204at 1409.475 kb on + strand, within Shewana3_1204at 1409.475 kb on + strand, within Shewana3_1204

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,407,195 - Shewana3_1201 0.45 -0.7
1,407,244 - Shewana3_1201 0.60 -0.6
1,407,244 - Shewana3_1201 0.60 -1.1
1,407,501 + -0.7
1,407,678 - Shewana3_1202 0.48 -2.3
1,407,751 - Shewana3_1202 0.71 -0.3
1,407,758 - Shewana3_1202 0.74 -2.0
1,407,916 - +0.2
1,407,939 + +0.5
1,408,118 + Shewana3_1203 0.17 +0.5
1,408,118 + Shewana3_1203 0.17 -0.2
1,408,125 + Shewana3_1203 0.19 +0.9
1,408,126 - Shewana3_1203 0.19 +1.0
1,408,126 - Shewana3_1203 0.19 -0.5
1,408,229 + Shewana3_1203 0.37 -0.3
1,408,230 + Shewana3_1203 0.37 +0.1
1,408,353 + Shewana3_1203 0.59 -0.1
1,408,353 + Shewana3_1203 0.59 +0.6
1,408,353 + Shewana3_1203 0.59 -0.8
1,408,361 - Shewana3_1203 0.61 +0.3
1,408,361 - Shewana3_1203 0.61 +0.4
1,408,786 + +0.2
1,409,087 - Shewana3_1204 0.24 -1.6
1,409,225 + Shewana3_1204 0.45 -0.5
1,409,417 + Shewana3_1204 0.75 +0.7
1,409,425 - Shewana3_1204 0.76 -1.7
1,409,463 + Shewana3_1204 0.82 +0.6
1,409,471 - Shewana3_1204 0.84 -1.8
1,409,475 + Shewana3_1204 0.84 -0.1
1,409,475 + Shewana3_1204 0.84 -0.3

Or see this region's nucleotide sequence