Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1082

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1081 and Shewana3_1082 are separated by 143 nucleotidesShewana3_1082 and Shewana3_1083 are separated by 75 nucleotides Shewana3_1081: Shewana3_1081 - AraC family transcriptional regulator (RefSeq), at 1,268,883 to 1,269,650 _1081 Shewana3_1082: Shewana3_1082 - major facilitator transporter (RefSeq), at 1,269,794 to 1,270,972 _1082 Shewana3_1083: Shewana3_1083 - acriflavin resistance protein (RefSeq), at 1,271,048 to 1,274,203 _1083 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1269.206 kb on - strand, within Shewana3_1081at 1269.256 kb on - strand, within Shewana3_1081at 1269.278 kb on - strand, within Shewana3_1081at 1269.404 kb on + strand, within Shewana3_1081at 1269.549 kb on + strand, within Shewana3_1081at 1269.708 kb on + strandat 1269.708 kb on + strandat 1269.708 kb on + strandat 1270.035 kb on - strand, within Shewana3_1082at 1270.078 kb on + strand, within Shewana3_1082at 1270.115 kb on + strand, within Shewana3_1082at 1270.231 kb on + strand, within Shewana3_1082at 1270.246 kb on + strand, within Shewana3_1082at 1270.253 kb on + strand, within Shewana3_1082at 1270.597 kb on - strand, within Shewana3_1082at 1270.650 kb on + strand, within Shewana3_1082at 1270.835 kb on + strand, within Shewana3_1082at 1270.855 kb on + strandat 1270.908 kb on - strandat 1270.913 kb on - strandat 1271.025 kb on - strandat 1271.187 kb on - strandat 1271.203 kb on - strandat 1271.256 kb on - strandat 1271.508 kb on - strand, within Shewana3_1083at 1271.638 kb on + strand, within Shewana3_1083at 1271.760 kb on + strand, within Shewana3_1083at 1271.768 kb on - strand, within Shewana3_1083at 1271.790 kb on - strand, within Shewana3_1083at 1271.851 kb on + strand, within Shewana3_1083at 1271.860 kb on - strand, within Shewana3_1083at 1271.874 kb on + strand, within Shewana3_1083

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,269,206 - Shewana3_1081 0.42 -0.4
1,269,256 - Shewana3_1081 0.49 +0.2
1,269,278 - Shewana3_1081 0.51 -3.8
1,269,404 + Shewana3_1081 0.68 +1.0
1,269,549 + Shewana3_1081 0.87 +0.4
1,269,708 + -1.1
1,269,708 + -1.6
1,269,708 + -1.1
1,270,035 - Shewana3_1082 0.20 +0.0
1,270,078 + Shewana3_1082 0.24 -0.0
1,270,115 + Shewana3_1082 0.27 -0.4
1,270,231 + Shewana3_1082 0.37 +0.5
1,270,246 + Shewana3_1082 0.38 +0.1
1,270,253 + Shewana3_1082 0.39 -0.2
1,270,597 - Shewana3_1082 0.68 +0.5
1,270,650 + Shewana3_1082 0.73 +0.1
1,270,835 + Shewana3_1082 0.88 +0.4
1,270,855 + +0.1
1,270,908 - +1.4
1,270,913 - -0.5
1,271,025 - +0.9
1,271,187 - -0.3
1,271,203 - +0.1
1,271,256 - -1.8
1,271,508 - Shewana3_1083 0.15 +0.0
1,271,638 + Shewana3_1083 0.19 +0.7
1,271,760 + Shewana3_1083 0.23 -0.3
1,271,768 - Shewana3_1083 0.23 -0.3
1,271,790 - Shewana3_1083 0.24 +0.3
1,271,851 + Shewana3_1083 0.25 +0.8
1,271,860 - Shewana3_1083 0.26 +0.2
1,271,874 + Shewana3_1083 0.26 +1.1

Or see this region's nucleotide sequence